Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 3' | -52.3 | NC_001347.2 | + | 228059 | 0.66 | 0.994155 |
Target: 5'- -aGACGUCGUGGcgaggggauGGGuuuauuggauaUCGGUgaAGCAGCg -3' miRNA: 3'- ugUUGCAGCACC---------UUC-----------AGUCG--UCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 210071 | 0.68 | 0.974757 |
Target: 5'- aACAcCGUUGguUGGAGaagcguauucgcGUCAGgAGCAGCg -3' miRNA: 3'- -UGUuGCAGC--ACCUU------------CAGUCgUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 203837 | 0.76 | 0.680153 |
Target: 5'- -gGAgGUCGUGGAGG-CAGCGGgGGUg -3' miRNA: 3'- ugUUgCAGCACCUUCaGUCGUCgUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 198117 | 0.66 | 0.992274 |
Target: 5'- --cGCGUUGaGGAuAGUCGcGCGGUGGCa -3' miRNA: 3'- uguUGCAGCaCCU-UCAGU-CGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 197548 | 0.69 | 0.969179 |
Target: 5'- cGCAGCGUggccggCGUGGcGGcCGaCGGCAGCg -3' miRNA: 3'- -UGUUGCA------GCACCuUCaGUcGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 197232 | 0.7 | 0.945996 |
Target: 5'- cACGAgGUC--GGAGGUCAcgccacaugaagccGCGGCGGCg -3' miRNA: 3'- -UGUUgCAGcaCCUUCAGU--------------CGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 188248 | 0.67 | 0.98994 |
Target: 5'- gACGACGagGUGGug--CAGCgugagaaacAGCAGCu -3' miRNA: 3'- -UGUUGCagCACCuucaGUCG---------UCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 185146 | 0.66 | 0.992274 |
Target: 5'- -gGGCGgcaCG-GGcAAGugcuUCAGCAGCAGCu -3' miRNA: 3'- ugUUGCa--GCaCC-UUC----AGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 181051 | 0.66 | 0.991845 |
Target: 5'- uCAGCGUCGUccgcgcgGGCGGCAGCa -3' miRNA: 3'- uGUUGCAGCAccuucagUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 174994 | 0.67 | 0.98994 |
Target: 5'- uGguGCGggcCGUGccgguGGAGUC-GCAGCAGCg -3' miRNA: 3'- -UguUGCa--GCAC-----CUUCAGuCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173812 | 0.68 | 0.981692 |
Target: 5'- -uGACGUCcaaagGUGGA--UCgGGCGGCGGCg -3' miRNA: 3'- ugUUGCAG-----CACCUucAG-UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173648 | 0.73 | 0.823118 |
Target: 5'- uCGGCGUC-UGGGAGgagguggCGGCGGUGGCg -3' miRNA: 3'- uGUUGCAGcACCUUCa------GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173506 | 0.69 | 0.959245 |
Target: 5'- gACAaaaauuACGUCG-GGAacagcggcaAGUCgcguGGCGGCGGCg -3' miRNA: 3'- -UGU------UGCAGCaCCU---------UCAG----UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 166057 | 0.69 | 0.969179 |
Target: 5'- -gGGCGUCaUGcGGAGUC-GCGGCGGUu -3' miRNA: 3'- ugUUGCAGcAC-CUUCAGuCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 165091 | 0.66 | 0.993267 |
Target: 5'- gGCAGCGgagGUaaGGAAGgugCGGCGGUGGUc -3' miRNA: 3'- -UGUUGCag-CA--CCUUCa--GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 164731 | 0.7 | 0.94286 |
Target: 5'- uGCAACGUCcaGGcgcuGGUguuggcaggcaaCGGCGGCAGCg -3' miRNA: 3'- -UGUUGCAGcaCCu---UCA------------GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 163214 | 0.66 | 0.991168 |
Target: 5'- --cGCGUaCGUGGc-GUUGGCGGCAcGCa -3' miRNA: 3'- uguUGCA-GCACCuuCAGUCGUCGU-CG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 162142 | 0.71 | 0.898055 |
Target: 5'- aGCAGCGUuuugaaaacgggcUGcUGGAAGUCGGCgGGCGGg -3' miRNA: 3'- -UGUUGCA-------------GC-ACCUUCAGUCG-UCGUCg -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 158728 | 0.66 | 0.994947 |
Target: 5'- uGCAGCaGgcgCGcGGcGGuUUAGCAGCGGCu -3' miRNA: 3'- -UGUUG-Ca--GCaCCuUC-AGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 158193 | 0.67 | 0.988584 |
Target: 5'- -gGugGcCGUGGucuGUCGGCAGU-GCg -3' miRNA: 3'- ugUugCaGCACCuu-CAGUCGUCGuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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