miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 3' -52.3 NC_001347.2 + 78361 0.68 0.974757
Target:  5'- cCGGCGUgGUGGGAccCGGCGGC-GCc -3'
miRNA:   3'- uGUUGCAgCACCUUcaGUCGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 77518 0.66 0.993267
Target:  5'- cGCGugGccgaggaGUGGAAGUU-GCAcGCGGCg -3'
miRNA:   3'- -UGUugCag-----CACCUUCAGuCGU-CGUCG- -5'
1962 3' -52.3 NC_001347.2 + 77298 0.68 0.981692
Target:  5'- gGCGuCGUCGUacuuGGgcGUgGGCcGCGGCg -3'
miRNA:   3'- -UGUuGCAGCA----CCuuCAgUCGuCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 77062 0.69 0.969179
Target:  5'- cCGGCcUCGgacGAAG-CGGCAGCGGCg -3'
miRNA:   3'- uGUUGcAGCac-CUUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 76785 0.72 0.876824
Target:  5'- cCAGCGucUCGUGGcuaacggcgcuGUCAGCcAGCGGCa -3'
miRNA:   3'- uGUUGC--AGCACCuu---------CAGUCG-UCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 75410 0.79 0.517839
Target:  5'- aGCGGCGgcCGUGGcGG-CGGCAGCGGCg -3'
miRNA:   3'- -UGUUGCa-GCACCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 68677 0.66 0.994947
Target:  5'- cACGACGguaGUaGGGAGaUCcaugacGCGGCGGCg -3'
miRNA:   3'- -UGUUGCag-CA-CCUUC-AGu-----CGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 66776 0.73 0.823118
Target:  5'- cCGACGUCcgcccgacgGUGGuGG-CGGCGGCGGCa -3'
miRNA:   3'- uGUUGCAG---------CACCuUCaGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 53711 0.72 0.870997
Target:  5'- gACGACGUUGUGGcugcuauuGGGUCAcagccgcgugccGCGGguGCg -3'
miRNA:   3'- -UGUUGCAGCACC--------UUCAGU------------CGUCguCG- -5'
1962 3' -52.3 NC_001347.2 + 44043 0.73 0.831578
Target:  5'- gGCAGCGgugguggCGcUGGggGU-GGCGGCAGUg -3'
miRNA:   3'- -UGUUGCa------GC-ACCuuCAgUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 38737 0.72 0.86352
Target:  5'- aGCAACGUCuGUcGGAgcgccGGcugaGGCAGCAGCg -3'
miRNA:   3'- -UGUUGCAG-CA-CCU-----UCag--UCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 37935 0.68 0.972068
Target:  5'- cGCGGCG-CGcGGGug-CAGguGCAGCg -3'
miRNA:   3'- -UGUUGCaGCaCCUucaGUCguCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 34322 0.69 0.969179
Target:  5'- gACGugGgcggCGaUGaGAAcGUCAGCGGUGGCg -3'
miRNA:   3'- -UGUugCa---GC-AC-CUU-CAGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 29737 0.69 0.966082
Target:  5'- -uGugGUgGcUGGGAGUggUGGCGGCAGCc -3'
miRNA:   3'- ugUugCAgC-ACCUUCA--GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 20885 0.66 0.994947
Target:  5'- cCGACGUCGcUGGAAaugCAuCAGCuGCg -3'
miRNA:   3'- uGUUGCAGC-ACCUUca-GUcGUCGuCG- -5'
1962 3' -52.3 NC_001347.2 + 9500 0.67 0.988584
Target:  5'- cGCAACGaUUcUGGAAaugCGGUAGUAGCa -3'
miRNA:   3'- -UGUUGC-AGcACCUUca-GUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 7880 0.7 0.933258
Target:  5'- aACGGCGguaGUGaccagguGGUCAGUGGCGGCg -3'
miRNA:   3'- -UGUUGCag-CACcu-----UCAGUCGUCGUCG- -5'
1962 3' -52.3 NC_001347.2 + 2152 0.74 0.768985
Target:  5'- -gGugGUCG-GGgcGgacgCGGCAGCAGCa -3'
miRNA:   3'- ugUugCAGCaCCuuCa---GUCGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.