Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 3' | -52.3 | NC_001347.2 | + | 158728 | 0.66 | 0.994947 |
Target: 5'- uGCAGCaGgcgCGcGGcGGuUUAGCAGCGGCu -3' miRNA: 3'- -UGUUG-Ca--GCaCCuUC-AGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 20885 | 0.66 | 0.994947 |
Target: 5'- cCGACGUCGcUGGAAaugCAuCAGCuGCg -3' miRNA: 3'- uGUUGCAGC-ACCUUca-GUcGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 174994 | 0.67 | 0.98994 |
Target: 5'- uGguGCGggcCGUGccgguGGAGUC-GCAGCAGCg -3' miRNA: 3'- -UguUGCa--GCAC-----CUUCAGuCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 188248 | 0.67 | 0.98994 |
Target: 5'- gACGACGagGUGGug--CAGCgugagaaacAGCAGCu -3' miRNA: 3'- -UGUUGCagCACCuucaGUCG---------UCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 158193 | 0.67 | 0.988584 |
Target: 5'- -gGugGcCGUGGucuGUCGGCAGU-GCg -3' miRNA: 3'- ugUugCaGCACCuu-CAGUCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 34322 | 0.69 | 0.969179 |
Target: 5'- gACGugGgcggCGaUGaGAAcGUCAGCGGUGGCg -3' miRNA: 3'- -UGUugCa---GC-AC-CUU-CAGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 77062 | 0.69 | 0.969179 |
Target: 5'- cCGGCcUCGgacGAAG-CGGCAGCGGCg -3' miRNA: 3'- uGUUGcAGCac-CUUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 78361 | 0.68 | 0.974757 |
Target: 5'- cCGGCGUgGUGGGAccCGGCGGC-GCc -3' miRNA: 3'- uGUUGCAgCACCUUcaGUCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 150581 | 0.68 | 0.981692 |
Target: 5'- uCAGCGUCGgcuccGGcAG-UAGUGGCGGCg -3' miRNA: 3'- uGUUGCAGCa----CCuUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 210071 | 0.68 | 0.974757 |
Target: 5'- aACAcCGUUGguUGGAGaagcguauucgcGUCAGgAGCAGCg -3' miRNA: 3'- -UGUuGCAGC--ACCUU------------CAGUCgUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 37935 | 0.68 | 0.972068 |
Target: 5'- cGCGGCG-CGcGGGug-CAGguGCAGCg -3' miRNA: 3'- -UGUUGCaGCaCCUucaGUCguCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 173812 | 0.68 | 0.981692 |
Target: 5'- -uGACGUCcaaagGUGGA--UCgGGCGGCGGCg -3' miRNA: 3'- ugUUGCAG-----CACCUucAG-UCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 77298 | 0.68 | 0.981692 |
Target: 5'- gGCGuCGUCGUacuuGGgcGUgGGCcGCGGCg -3' miRNA: 3'- -UGUuGCAGCA----CCuuCAgUCGuCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 93218 | 0.67 | 0.983651 |
Target: 5'- gGCGACGagcUCGcUGaGcGG-CAGCGGCGGCa -3' miRNA: 3'- -UGUUGC---AGC-AC-CuUCaGUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 128436 | 0.67 | 0.987089 |
Target: 5'- cACGGCGccugcugCGUGGccGUCaAGCGGC-GCg -3' miRNA: 3'- -UGUUGCa------GCACCuuCAG-UCGUCGuCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 104327 | 0.67 | 0.987089 |
Target: 5'- cACGACGagGUGGAccgcuGGaucCGGCAcGCGGCc -3' miRNA: 3'- -UGUUGCagCACCU-----UCa--GUCGU-CGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 9500 | 0.67 | 0.988584 |
Target: 5'- cGCAACGaUUcUGGAAaugCGGUAGUAGCa -3' miRNA: 3'- -UGUUGC-AGcACCUUca-GUCGUCGUCG- -5' |
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1962 | 3' | -52.3 | NC_001347.2 | + | 68677 | 0.66 | 0.994947 |
Target: 5'- cACGACGguaGUaGGGAGaUCcaugacGCGGCGGCg -3' miRNA: 3'- -UGUUGCag-CA-CCUUC-AGu-----CGUCGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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