miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 117320 0.66 0.79813
Target:  5'- cGCGUaauaguuguuACCCGC--GGCGACGGgGCCu- -3'
miRNA:   3'- -CGCG----------UGGGCGgcUCGCUGCUgCGGug -5'
1962 5' -61.7 NC_001347.2 + 153767 0.66 0.79813
Target:  5'- uCGCGCCagugCGCCGu----CGACGCCGCu -3'
miRNA:   3'- cGCGUGG----GCGGCucgcuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 28246 0.66 0.79813
Target:  5'- cGCGUACUgGCUGGaaCGuCGGCGCCGa -3'
miRNA:   3'- -CGCGUGGgCGGCUc-GCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 116644 0.66 0.79813
Target:  5'- uUGCuCuuGCUGAGCugcaugagcACGGCGCCGCc -3'
miRNA:   3'- cGCGuGggCGGCUCGc--------UGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 96291 0.66 0.79813
Target:  5'- -aGCcaUCGCCGAGUGcGCGGCGCaCAUg -3'
miRNA:   3'- cgCGugGGCGGCUCGC-UGCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 40605 0.66 0.79813
Target:  5'- aGCGUuCUgGCCGc-CGGCGAUGCCGg -3'
miRNA:   3'- -CGCGuGGgCGGCucGCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 40370 0.66 0.793088
Target:  5'- cGCGCcccgacacacccaaaACaCCGCCG-GUG-CGGgGCCGCg -3'
miRNA:   3'- -CGCG---------------UG-GGCGGCuCGCuGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 17342 0.66 0.789701
Target:  5'- cGCGUAUggCCGCCggccacgaGAGCGAUGACGaCGa -3'
miRNA:   3'- -CGCGUG--GGCGG--------CUCGCUGCUGCgGUg -5'
1962 5' -61.7 NC_001347.2 + 41344 0.66 0.789701
Target:  5'- cGCGCACaCGauuCCGAG-GACGGCGUCu- -3'
miRNA:   3'- -CGCGUGgGC---GGCUCgCUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 126511 0.66 0.789701
Target:  5'- gGCGUACgCCGUCGcGCGcaacCGCCGCg -3'
miRNA:   3'- -CGCGUG-GGCGGCuCGCugcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 65194 0.66 0.788852
Target:  5'- gGCGaugGCUCGCCGGccguguacacguGCGugGACgaccuguGCCGCg -3'
miRNA:   3'- -CGCg--UGGGCGGCU------------CGCugCUG-------CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 100863 0.66 0.788852
Target:  5'- aGCGuCACa-GCCGAgGCGGCGcggcgcaGCGCCGg -3'
miRNA:   3'- -CGC-GUGggCGGCU-CGCUGC-------UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 174152 0.66 0.787149
Target:  5'- aGCGaCGuCCCGCgCGgaucggacacuuuaGGCGGCGcaGCGCCAg -3'
miRNA:   3'- -CGC-GU-GGGCG-GC--------------UCGCUGC--UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 82579 0.66 0.786296
Target:  5'- cGCGCACCacgaacgugugaaGCCGcggcucGGC-ACGGcCGCCACc -3'
miRNA:   3'- -CGCGUGGg------------CGGC------UCGcUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 81721 0.66 0.781151
Target:  5'- aGCuuGCCgGCCGAGCccACGAUGUCGg -3'
miRNA:   3'- -CGcgUGGgCGGCUCGc-UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 15592 0.66 0.781151
Target:  5'- aCGgGCCCGCgGcugcauugccuGGUGACGACGCg-- -3'
miRNA:   3'- cGCgUGGGCGgC-----------UCGCUGCUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 185136 0.66 0.781151
Target:  5'- -aGCAgCCGCCGGGCGGC-ACGg--- -3'
miRNA:   3'- cgCGUgGGCGGCUCGCUGcUGCggug -5'
1962 5' -61.7 NC_001347.2 + 188854 0.66 0.781151
Target:  5'- aCGUuCCUGCUG-GCGcCGGCGCUGCc -3'
miRNA:   3'- cGCGuGGGCGGCuCGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 193227 0.66 0.781151
Target:  5'- cGCGCgACuuGgCCGAccuguGCGuGCGACGCgACu -3'
miRNA:   3'- -CGCG-UGggC-GGCU-----CGC-UGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 209779 0.66 0.775964
Target:  5'- uGCGCuucGgCCGCCGGGUucuGucucggaacccacguGCGACGCCAa -3'
miRNA:   3'- -CGCG---UgGGCGGCUCG---C---------------UGCUGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.