Results 21 - 40 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 81721 | 0.66 | 0.781151 |
Target: 5'- aGCuuGCCgGCCGAGCccACGAUGUCGg -3' miRNA: 3'- -CGcgUGGgCGGCUCGc-UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 126511 | 0.66 | 0.789701 |
Target: 5'- gGCGUACgCCGUCGcGCGcaacCGCCGCg -3' miRNA: 3'- -CGCGUG-GGCGGCuCGCugcuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 40605 | 0.66 | 0.79813 |
Target: 5'- aGCGUuCUgGCCGc-CGGCGAUGCCGg -3' miRNA: 3'- -CGCGuGGgCGGCucGCUGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 40370 | 0.66 | 0.793088 |
Target: 5'- cGCGCcccgacacacccaaaACaCCGCCG-GUG-CGGgGCCGCg -3' miRNA: 3'- -CGCG---------------UG-GGCGGCuCGCuGCUgCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 96291 | 0.66 | 0.79813 |
Target: 5'- -aGCcaUCGCCGAGUGcGCGGCGCaCAUg -3' miRNA: 3'- cgCGugGGCGGCUCGC-UGCUGCG-GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 116644 | 0.66 | 0.79813 |
Target: 5'- uUGCuCuuGCUGAGCugcaugagcACGGCGCCGCc -3' miRNA: 3'- cGCGuGggCGGCUCGc--------UGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 28246 | 0.66 | 0.79813 |
Target: 5'- cGCGUACUgGCUGGaaCGuCGGCGCCGa -3' miRNA: 3'- -CGCGUGGgCGGCUc-GCuGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 153767 | 0.66 | 0.79813 |
Target: 5'- uCGCGCCagugCGCCGu----CGACGCCGCu -3' miRNA: 3'- cGCGUGG----GCGGCucgcuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 117320 | 0.66 | 0.79813 |
Target: 5'- cGCGUaauaguuguuACCCGC--GGCGACGGgGCCu- -3' miRNA: 3'- -CGCG----------UGGGCGgcUCGCUGCUgCGGug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 41344 | 0.66 | 0.789701 |
Target: 5'- cGCGCACaCGauuCCGAG-GACGGCGUCu- -3' miRNA: 3'- -CGCGUGgGC---GGCUCgCUGCUGCGGug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 65194 | 0.66 | 0.788852 |
Target: 5'- gGCGaugGCUCGCCGGccguguacacguGCGugGACgaccuguGCCGCg -3' miRNA: 3'- -CGCg--UGGGCGGCU------------CGCugCUG-------CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 15592 | 0.66 | 0.781151 |
Target: 5'- aCGgGCCCGCgGcugcauugccuGGUGACGACGCg-- -3' miRNA: 3'- cGCgUGGGCGgC-----------UCGCUGCUGCGgug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 185136 | 0.66 | 0.781151 |
Target: 5'- -aGCAgCCGCCGGGCGGC-ACGg--- -3' miRNA: 3'- cgCGUgGGCGGCUCGCUGcUGCggug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 188854 | 0.66 | 0.781151 |
Target: 5'- aCGUuCCUGCUG-GCGcCGGCGCUGCc -3' miRNA: 3'- cGCGuGGGCGGCuCGCuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193227 | 0.66 | 0.781151 |
Target: 5'- cGCGCgACuuGgCCGAccuguGCGuGCGACGCgACu -3' miRNA: 3'- -CGCG-UGggC-GGCU-----CGC-UGCUGCGgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 82579 | 0.66 | 0.786296 |
Target: 5'- cGCGCACCacgaacgugugaaGCCGcggcucGGC-ACGGcCGCCACc -3' miRNA: 3'- -CGCGUGGg------------CGGC------UCGcUGCU-GCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 174152 | 0.66 | 0.787149 |
Target: 5'- aGCGaCGuCCCGCgCGgaucggacacuuuaGGCGGCGcaGCGCCAg -3' miRNA: 3'- -CGC-GU-GGGCG-GC--------------UCGCUGC--UGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 100863 | 0.66 | 0.788852 |
Target: 5'- aGCGuCACa-GCCGAgGCGGCGcggcgcaGCGCCGg -3' miRNA: 3'- -CGC-GUGggCGGCU-CGCUGC-------UGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 17342 | 0.66 | 0.789701 |
Target: 5'- cGCGUAUggCCGCCggccacgaGAGCGAUGACGaCGa -3' miRNA: 3'- -CGCGUG--GGCGG--------CUCGCUGCUGCgGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 94834 | 0.67 | 0.745862 |
Target: 5'- uGUaCACgCCGCUGAGC-ACGGCGCUg- -3' miRNA: 3'- -CGcGUG-GGCGGCUCGcUGCUGCGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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