miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 229672 0.67 0.745862
Target:  5'- gGUGUGCCgGCgGGGUGugGugGCgGg -3'
miRNA:   3'- -CGCGUGGgCGgCUCGCugCugCGgUg -5'
1962 5' -61.7 NC_001347.2 + 38113 0.67 0.743154
Target:  5'- aCGUGCCCGUCcAGCGggcaguacccgaacACGGCGCC-Ca -3'
miRNA:   3'- cGCGUGGGCGGcUCGC--------------UGCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 193 0.67 0.745862
Target:  5'- gGUGUGCCgGCgGGGUGugGugGCgGg -3'
miRNA:   3'- -CGCGUGGgCGgCUCGCugCugCGgUg -5'
1962 5' -61.7 NC_001347.2 + 15547 0.67 0.736806
Target:  5'- gGUGUggaaGCa-GCCGAGCG-CGAgGCCGCu -3'
miRNA:   3'- -CGCG----UGggCGGCUCGCuGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 190407 0.67 0.736806
Target:  5'- cGUGCAUCUGCCGAaacaccGUGugGugGUugUACg -3'
miRNA:   3'- -CGCGUGGGCGGCU------CGCugCugCG--GUG- -5'
1962 5' -61.7 NC_001347.2 + 158662 0.67 0.736806
Target:  5'- gGCGC-CCCGCUGuGUcGgGGCGCgCGCu -3'
miRNA:   3'- -CGCGuGGGCGGCuCGcUgCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 78610 0.67 0.736806
Target:  5'- gGCGCGaggacuCCaugaGCCuGGGCGcgcGCGACGCCGa -3'
miRNA:   3'- -CGCGU------GGg---CGG-CUCGC---UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 178613 0.67 0.72767
Target:  5'- uGCGCGCCauccuggaauCUGAGCGGCGGa-CCGCg -3'
miRNA:   3'- -CGCGUGGgc--------GGCUCGCUGCUgcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 160949 0.67 0.72767
Target:  5'- -aGUcCuCCGCCGcuacAGCGGCGcCGCCAUg -3'
miRNA:   3'- cgCGuG-GGCGGC----UCGCUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 156522 0.67 0.72767
Target:  5'- gGCGCGCCCGCau-GuCGGCcGCGCUuACg -3'
miRNA:   3'- -CGCGUGGGCGgcuC-GCUGcUGCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 114057 0.67 0.72767
Target:  5'- uCGCuACCCGCucacCGAGCGAaCGAUGauggcCCGCg -3'
miRNA:   3'- cGCG-UGGGCG----GCUCGCU-GCUGC-----GGUG- -5'
1962 5' -61.7 NC_001347.2 + 68722 0.67 0.731333
Target:  5'- aGCGCAacgcucgucggaggCCGUgGAGCGAgUGcCGCCGCa -3'
miRNA:   3'- -CGCGUg-------------GGCGgCUCGCU-GCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 191971 0.67 0.72767
Target:  5'- uCGCugUCGCCGccaccgcagcGGCGGCGACGgaCgGCg -3'
miRNA:   3'- cGCGugGGCGGC----------UCGCUGCUGC--GgUG- -5'
1962 5' -61.7 NC_001347.2 + 12803 0.67 0.736806
Target:  5'- gGCGUuuucACUaCGCCGuG-GACGACGCCGa -3'
miRNA:   3'- -CGCG----UGG-GCGGCuCgCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 196143 0.68 0.671616
Target:  5'- cCGCuGCCUGCCG-GCGGCccugUGCCGCg -3'
miRNA:   3'- cGCG-UGGGCGGCuCGCUGcu--GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 7632 0.68 0.681069
Target:  5'- cCGCG-CCGUCGuuGuUGACGAUGCCGCa -3'
miRNA:   3'- cGCGUgGGCGGCu-C-GCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 87616 0.68 0.690488
Target:  5'- cCGUGCCCaCC-AGCGACGGCgGCUGCu -3'
miRNA:   3'- cGCGUGGGcGGcUCGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 81568 0.68 0.690488
Target:  5'- aGCgGCGgCaacaGCC-AGCGACGAuCGCCGCc -3'
miRNA:   3'- -CG-CGUgGg---CGGcUCGCUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 40190 0.68 0.690488
Target:  5'- cGCGCACaCCGCCGAcacACccCGCCACc -3'
miRNA:   3'- -CGCGUG-GGCGGCUcgcUGcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 157219 0.68 0.671616
Target:  5'- uGCGCugCaGCCGgaggaAGCGGCGguagaaACGUCGCa -3'
miRNA:   3'- -CGCGugGgCGGC-----UCGCUGC------UGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.