Results 81 - 100 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 128665 | 0.68 | 0.643115 |
Target: 5'- aCGCGCCCguGCCGc-CGGCGACcGCCGu -3' miRNA: 3'- cGCGUGGG--CGGCucGCUGCUG-CGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 197686 | 0.68 | 0.643115 |
Target: 5'- aGCGCGCUgCGCaGGGCaGACuGCGUCACg -3' miRNA: 3'- -CGCGUGG-GCGgCUCG-CUGcUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 107613 | 0.68 | 0.643115 |
Target: 5'- cCGUACUgGU-GAGCGACGagaacgGCGCCACg -3' miRNA: 3'- cGCGUGGgCGgCUCGCUGC------UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 117850 | 0.68 | 0.652632 |
Target: 5'- -gGCGgCCGCUGAcGCGGCGAcCGCguCa -3' miRNA: 3'- cgCGUgGGCGGCU-CGCUGCU-GCGguG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 158181 | 0.68 | 0.652632 |
Target: 5'- cGCGCGCUCGCUG-GUGGcCGugGUCu- -3' miRNA: 3'- -CGCGUGGGCGGCuCGCU-GCugCGGug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 88625 | 0.68 | 0.662134 |
Target: 5'- uGCGCgGCCUGCaccgcggcuUGAGCGGCGGC-CUGCg -3' miRNA: 3'- -CGCG-UGGGCG---------GCUCGCUGCUGcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 187456 | 0.68 | 0.690488 |
Target: 5'- cGUGCGCCacgauGCCGAGauCGugGaACGCgCGCu -3' miRNA: 3'- -CGCGUGGg----CGGCUC--GCugC-UGCG-GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 40190 | 0.68 | 0.690488 |
Target: 5'- cGCGCACaCCGCCGAcacACccCGCCACc -3' miRNA: 3'- -CGCGUG-GGCGGCUcgcUGcuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 81568 | 0.68 | 0.690488 |
Target: 5'- aGCgGCGgCaacaGCC-AGCGACGAuCGCCGCc -3' miRNA: 3'- -CG-CGUgGg---CGGcUCGCUGCU-GCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 87616 | 0.68 | 0.690488 |
Target: 5'- cCGUGCCCaCC-AGCGACGGCgGCUGCu -3' miRNA: 3'- cGCGUGGGcGGcUCGCUGCUG-CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 7632 | 0.68 | 0.681069 |
Target: 5'- cCGCG-CCGUCGuuGuUGACGAUGCCGCa -3' miRNA: 3'- cGCGUgGGCGGCu-C-GCUGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 196143 | 0.68 | 0.671616 |
Target: 5'- cCGCuGCCUGCCG-GCGGCccugUGCCGCg -3' miRNA: 3'- cGCG-UGGGCGGCuCGCUGcu--GCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 157219 | 0.68 | 0.671616 |
Target: 5'- uGCGCugCaGCCGgaggaAGCGGCGguagaaACGUCGCa -3' miRNA: 3'- -CGCGugGgCGGC-----UCGCUGC------UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 78354 | 0.68 | 0.671616 |
Target: 5'- gGCGgACCCGgCGuGgugggaccCGGCGGCGCCGu -3' miRNA: 3'- -CGCgUGGGCgGCuC--------GCUGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 39077 | 0.68 | 0.662134 |
Target: 5'- cGCGC-CCaCGCCGuucaucuggcuGCG-CGGCGUCACc -3' miRNA: 3'- -CGCGuGG-GCGGCu----------CGCuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 154931 | 0.69 | 0.624066 |
Target: 5'- aCGUugCUacuGCCG-GCGACGGCuccGCCGCa -3' miRNA: 3'- cGCGugGG---CGGCuCGCUGCUG---CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 103802 | 0.69 | 0.632638 |
Target: 5'- uGCGCGgC-GuuGAGCGACGAcauuaaaCGCUACg -3' miRNA: 3'- -CGCGUgGgCggCUCGCUGCU-------GCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 38831 | 0.69 | 0.624066 |
Target: 5'- cCGCGCCgUGCCGAaaccacucguccGCGuCGcGCGCCGCu -3' miRNA: 3'- cGCGUGG-GCGGCU------------CGCuGC-UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 62744 | 0.69 | 0.633591 |
Target: 5'- cGCGCcgcCCCGUgacgaCGAGCGGCGGCcgaccCCGCc -3' miRNA: 3'- -CGCGu--GGGCG-----GCUCGCUGCUGc----GGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 1992 | 0.69 | 0.624066 |
Target: 5'- aCGU-CCCGCC-AGCGGCGAgCGgCACg -3' miRNA: 3'- cGCGuGGGCGGcUCGCUGCU-GCgGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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