miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 153862 0.82 0.107791
Target:  5'- cGUGUGCCgCGCCGAGCGGCGACGUgcauuCGCg -3'
miRNA:   3'- -CGCGUGG-GCGGCUCGCUGCUGCG-----GUG- -5'
1962 5' -61.7 NC_001347.2 + 187977 0.77 0.213708
Target:  5'- cGCGCGCUCGCCGucguuggaguuuGaCGAUGACGCCAa -3'
miRNA:   3'- -CGCGUGGGCGGCu-----------C-GCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 85524 0.77 0.240489
Target:  5'- gGCGCGCgCGCuUGAGCGugGcccugaagaGCGCCGCg -3'
miRNA:   3'- -CGCGUGgGCG-GCUCGCugC---------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 13516 0.77 0.224712
Target:  5'- uGCuCACCCGCCGGGCGGCccGgGCCGCc -3'
miRNA:   3'- -CGcGUGGGCGGCUCGCUGc-UgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 199716 0.76 0.251514
Target:  5'- gGCGCGCCCGCUGcgaucuGCGGuugcCGACGCgACg -3'
miRNA:   3'- -CGCGUGGGCGGCu-----CGCU----GCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 38412 0.76 0.24595
Target:  5'- cGUGcCGCUCGCCGcuGGCGGCGACGUCGu -3'
miRNA:   3'- -CGC-GUGGGCGGC--UCGCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 6864 0.76 0.280893
Target:  5'- cGUGCAgCCGCCGAGCccguCGACGUUGCc -3'
miRNA:   3'- -CGCGUgGGCGGCUCGcu--GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 109451 0.76 0.280893
Target:  5'- aGCGCAagacgcCCCGCgucaccGGCGGCGGCGCCAUg -3'
miRNA:   3'- -CGCGU------GGGCGgc----UCGCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 2314 0.75 0.287087
Target:  5'- cGUGUACCCGCUG-GCGGCGGagcUGUCGCa -3'
miRNA:   3'- -CGCGUGGGCGGCuCGCUGCU---GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 82884 0.75 0.30631
Target:  5'- gGCGCGCCCccaucgccucCCGAGCGAgCGGgcCGCCGCu -3'
miRNA:   3'- -CGCGUGGGc---------GGCUCGCU-GCU--GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 2484 0.75 0.319665
Target:  5'- cGCGCGCCgCGCUguGGGCGcGCGA-GCCGCa -3'
miRNA:   3'- -CGCGUGG-GCGG--CUCGC-UGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 172142 0.75 0.299795
Target:  5'- gGCGCAUCUGUgGGGCG-UGACGCCGu -3'
miRNA:   3'- -CGCGUGGGCGgCUCGCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 63256 0.75 0.319665
Target:  5'- cGCuGCGCCCGCCGuggccaccaacGGCGGuaACGCCACc -3'
miRNA:   3'- -CG-CGUGGGCGGC-----------UCGCUgcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 139242 0.74 0.340506
Target:  5'- cGUGCAUCgGCUGuGCGAgGACGCC-Cg -3'
miRNA:   3'- -CGCGUGGgCGGCuCGCUgCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 97517 0.74 0.326504
Target:  5'- gGCGCGCgCCGCCGAGauuCGuCGCUGCa -3'
miRNA:   3'- -CGCGUG-GGCGGCUCgcuGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 113179 0.74 0.354938
Target:  5'- cGCGCGCCCcaGCCGc-CGGCGugGCgGCc -3'
miRNA:   3'- -CGCGUGGG--CGGCucGCUGCugCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 63008 0.74 0.332752
Target:  5'- aGCGCGCCCGCCacuGCGgaagucugucuggGCGACGCUcuGCc -3'
miRNA:   3'- -CGCGUGGGCGGcu-CGC-------------UGCUGCGG--UG- -5'
1962 5' -61.7 NC_001347.2 + 38696 0.74 0.362314
Target:  5'- gGCGCAgcuCCCGuCCGAGCGcCGuCGCCu- -3'
miRNA:   3'- -CGCGU---GGGC-GGCUCGCuGCuGCGGug -5'
1962 5' -61.7 NC_001347.2 + 60462 0.74 0.333451
Target:  5'- cCGCACCUGCC--GCGuCGACGCCGa -3'
miRNA:   3'- cGCGUGGGCGGcuCGCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 128255 0.74 0.348391
Target:  5'- -gGUGCUCGCCuaucaccuguacgguGGCGACGGCGCCACu -3'
miRNA:   3'- cgCGUGGGCGGc--------------UCGCUGCUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.