Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 140887 | 0.71 | 0.476119 |
Target: 5'- gGUGCGCCUcaagagcaGCCGcgacgaGGUGGCgGGCGCCACg -3' miRNA: 3'- -CGCGUGGG--------CGGC------UCGCUG-CUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 88366 | 0.71 | 0.476119 |
Target: 5'- gGCGCugCCG-CGAGaCGACGugGaCgGCa -3' miRNA: 3'- -CGCGugGGCgGCUC-GCUGCugC-GgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 196447 | 0.71 | 0.493815 |
Target: 5'- cGC-CACCUcacgGCCG-GCGACGugGcCCGCg -3' miRNA: 3'- -CGcGUGGG----CGGCuCGCUGCugC-GGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 208852 | 0.71 | 0.484928 |
Target: 5'- -aGCGCCCGCCG-GCGAuguaacagcUGGCGUCGu -3' miRNA: 3'- cgCGUGGGCGGCuCGCU---------GCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 166283 | 0.71 | 0.46739 |
Target: 5'- aGCGCGCguugcaCCGCgGuaaCGACGGCGCCAUu -3' miRNA: 3'- -CGCGUG------GGCGgCuc-GCUGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 149914 | 0.7 | 0.57664 |
Target: 5'- -aGC-CCCGCCGuggguuuuaAGCGGCaGuACGCCGCc -3' miRNA: 3'- cgCGuGGGCGGC---------UCGCUG-C-UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 142510 | 0.7 | 0.530062 |
Target: 5'- gGCGUGCCCGgCGAGacggGAgGugGCUGCu -3' miRNA: 3'- -CGCGUGGGCgGCUCg---CUgCugCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 88244 | 0.7 | 0.530062 |
Target: 5'- uCGCugCCGCCGGugaagagagcGCGGCGuACGCUg- -3' miRNA: 3'- cGCGugGGCGGCU----------CGCUGC-UGCGGug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 153355 | 0.7 | 0.524559 |
Target: 5'- aGCGCAag-GCCGAGCGucguucgcgcggcguGCGcACGCCGCu -3' miRNA: 3'- -CGCGUgggCGGCUCGC---------------UGC-UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 128439 | 0.7 | 0.524559 |
Target: 5'- -gGCGCCUGCugcguggccgucaagCGGcGCGACGGCGCgCGCa -3' miRNA: 3'- cgCGUGGGCG---------------GCU-CGCUGCUGCG-GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 1757 | 0.7 | 0.520902 |
Target: 5'- gGCGCugCagaCGCCGGGCaGGCGACugcaGCCGa -3' miRNA: 3'- -CGCGugG---GCGGCUCG-CUGCUG----CGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 39344 | 0.7 | 0.539279 |
Target: 5'- gGCGCccggcgGCCCGCgGGGUucuacccgGugGACGCCGu -3' miRNA: 3'- -CGCG------UGGGCGgCUCG--------CugCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 196964 | 0.7 | 0.539279 |
Target: 5'- uCGCGCgCCGCCGAcGCccgaGACGGCG-CGCg -3' miRNA: 3'- cGCGUG-GGCGGCU-CG----CUGCUGCgGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 110858 | 0.7 | 0.539279 |
Target: 5'- aCGCAUCgCGCCGAgGUGGUGGCGCgACa -3' miRNA: 3'- cGCGUGG-GCGGCU-CGCUGCUGCGgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 187058 | 0.7 | 0.539279 |
Target: 5'- gGCGCAgUC-CgGGGCGACGACGCUu- -3' miRNA: 3'- -CGCGUgGGcGgCUCGCUGCUGCGGug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 166324 | 0.7 | 0.54855 |
Target: 5'- uUGCGCCUGCuCGAGCGcCaAUGUCACg -3' miRNA: 3'- cGCGUGGGCG-GCUCGCuGcUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 78415 | 0.7 | 0.557871 |
Target: 5'- gGCuGCugCCGCCGccacccGGCccGGCGGCGCC-Cg -3' miRNA: 3'- -CG-CGugGGCGGC------UCG--CUGCUGCGGuG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 88686 | 0.7 | 0.54855 |
Target: 5'- gGCGCGCCCuGCUG-G-GACGACGCaaugGCg -3' miRNA: 3'- -CGCGUGGG-CGGCuCgCUGCUGCGg---UG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 170780 | 0.7 | 0.557871 |
Target: 5'- uGCGCA-UCGCCGuGGCGuuGACgGCCGCu -3' miRNA: 3'- -CGCGUgGGCGGC-UCGCugCUG-CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 142348 | 0.7 | 0.57664 |
Target: 5'- cGCGUGCUggaCGCCGAcgcccaGCGAUuaacgGACGCCGCc -3' miRNA: 3'- -CGCGUGG---GCGGCU------CGCUG-----CUGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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