miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 76983 0.73 0.377383
Target:  5'- -gGCGCCCGCCGugccGGUGACGAgcaGCgCGCg -3'
miRNA:   3'- cgCGUGGGCGGC----UCGCUGCUg--CG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 38307 0.73 0.377383
Target:  5'- cGCGCcCCCGCCG-GCGGCGccguACgGCUGCg -3'
miRNA:   3'- -CGCGuGGGCGGCuCGCUGC----UG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 93212 0.73 0.392867
Target:  5'- cGCGCuggcgacgaGCUCGCUGAGCGgcaGCGGCGgCACc -3'
miRNA:   3'- -CGCG---------UGGGCGGCUCGC---UGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 128758 0.73 0.392867
Target:  5'- aGCGUGCCCGaacgugaccuuCCuAGCGACGGCgGCCAUg -3'
miRNA:   3'- -CGCGUGGGC-----------GGcUCGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 192577 0.73 0.392867
Target:  5'- aCGCGCCUGUCaGGGCGAUGACGaCAUc -3'
miRNA:   3'- cGCGUGGGCGG-CUCGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 1820 0.73 0.400763
Target:  5'- gGCGCAgUacgaGCCGuucGCGuCGGCGCCGCa -3'
miRNA:   3'- -CGCGUgGg---CGGCu--CGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 2392 0.73 0.408759
Target:  5'- -gGCGCCCGCCGccgaggccgcGCGGCGGCuGCUGCc -3'
miRNA:   3'- cgCGUGGGCGGCu---------CGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 116891 0.72 0.416853
Target:  5'- cGCGCGCCCcCCGGGCaACc-CGCCGCc -3'
miRNA:   3'- -CGCGUGGGcGGCUCGcUGcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 99147 0.72 0.416853
Target:  5'- gGCGCGCguaCGCCGAGaccCGACGCgGCg -3'
miRNA:   3'- -CGCGUGg--GCGGCUCgcuGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 176338 0.72 0.424222
Target:  5'- uGUGUucuCCUGCCGAGaCGACGGuaacaacCGCCGCc -3'
miRNA:   3'- -CGCGu--GGGCGGCUC-GCUGCU-------GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1689 0.72 0.425045
Target:  5'- uUGCugCgCGCCGAggagGCGACGGCGCUcggACg -3'
miRNA:   3'- cGCGugG-GCGGCU----CGCUGCUGCGG---UG- -5'
1962 5' -61.7 NC_001347.2 + 106290 0.72 0.433332
Target:  5'- cGC-CGCCaaCGCCGAGCucuguCGGCGCCGCc -3'
miRNA:   3'- -CGcGUGG--GCGGCUCGcu---GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 768 0.72 0.441712
Target:  5'- cGUGuCGCCCGCggcacaCGGGCGACGaagGCGuCCGCg -3'
miRNA:   3'- -CGC-GUGGGCG------GCUCGCUGC---UGC-GGUG- -5'
1962 5' -61.7 NC_001347.2 + 95879 0.72 0.450184
Target:  5'- -aGCACCUGCacagcuucacgGAGaagGGCGACGCCACg -3'
miRNA:   3'- cgCGUGGGCGg----------CUCg--CUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128208 0.72 0.450184
Target:  5'- aCGCGCUCGCUuaacguGAcGCGuuauCGACGCCGCg -3'
miRNA:   3'- cGCGUGGGCGG------CU-CGCu---GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 38002 0.72 0.458744
Target:  5'- gGCaGCAgCCGCCGcgcggccucGGCGGCGgGCGCCGa -3'
miRNA:   3'- -CG-CGUgGGCGGC---------UCGCUGC-UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 151879 0.72 0.458744
Target:  5'- -gGCGCCCGgUGucCgGACGGCGCCGCa -3'
miRNA:   3'- cgCGUGGGCgGCucG-CUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 166283 0.71 0.46739
Target:  5'- aGCGCGCguugcaCCGCgGuaaCGACGGCGCCAUu -3'
miRNA:   3'- -CGCGUG------GGCGgCuc-GCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 5892 0.71 0.475242
Target:  5'- uCGCACCacagGCCGuGCGAgucguggauuacaCGACGCCAg -3'
miRNA:   3'- cGCGUGGg---CGGCuCGCU-------------GCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 140887 0.71 0.476119
Target:  5'- gGUGCGCCUcaagagcaGCCGcgacgaGGUGGCgGGCGCCACg -3'
miRNA:   3'- -CGCGUGGG--------CGGC------UCGCUG-CUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.