miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 88366 0.71 0.476119
Target:  5'- gGCGCugCCG-CGAGaCGACGugGaCgGCa -3'
miRNA:   3'- -CGCGugGGCgGCUC-GCUGCugC-GgUG- -5'
1962 5' -61.7 NC_001347.2 + 208852 0.71 0.484928
Target:  5'- -aGCGCCCGCCG-GCGAuguaacagcUGGCGUCGu -3'
miRNA:   3'- cgCGUGGGCGGCuCGCU---------GCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 196447 0.71 0.493815
Target:  5'- cGC-CACCUcacgGCCG-GCGACGugGcCCGCg -3'
miRNA:   3'- -CGcGUGGG----CGGCuCGCUGCugC-GGUG- -5'
1962 5' -61.7 NC_001347.2 + 153243 0.71 0.502775
Target:  5'- cGCGCGUCgGCCG-GCGACGGCGguUCGCc -3'
miRNA:   3'- -CGCGUGGgCGGCuCGCUGCUGC--GGUG- -5'
1962 5' -61.7 NC_001347.2 + 128860 0.71 0.511805
Target:  5'- cCGCGCCCGUCGcGC-ACGGCGCUu- -3'
miRNA:   3'- cGCGUGGGCGGCuCGcUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 1757 0.7 0.520902
Target:  5'- gGCGCugCagaCGCCGGGCaGGCGACugcaGCCGa -3'
miRNA:   3'- -CGCGugG---GCGGCUCG-CUGCUG----CGGUg -5'
1962 5' -61.7 NC_001347.2 + 127576 0.7 0.520902
Target:  5'- aGCGUGCCCGUgGAcGCGGCcGGCGCg-- -3'
miRNA:   3'- -CGCGUGGGCGgCU-CGCUG-CUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 153355 0.7 0.524559
Target:  5'- aGCGCAag-GCCGAGCGucguucgcgcggcguGCGcACGCCGCu -3'
miRNA:   3'- -CGCGUgggCGGCUCGC---------------UGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128439 0.7 0.524559
Target:  5'- -gGCGCCUGCugcguggccgucaagCGGcGCGACGGCGCgCGCa -3'
miRNA:   3'- cgCGUGGGCG---------------GCU-CGCUGCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 142510 0.7 0.530062
Target:  5'- gGCGUGCCCGgCGAGacggGAgGugGCUGCu -3'
miRNA:   3'- -CGCGUGGGCgGCUCg---CUgCugCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 88244 0.7 0.530062
Target:  5'- uCGCugCCGCCGGugaagagagcGCGGCGuACGCUg- -3'
miRNA:   3'- cGCGugGGCGGCU----------CGCUGC-UGCGGug -5'
1962 5' -61.7 NC_001347.2 + 110858 0.7 0.539279
Target:  5'- aCGCAUCgCGCCGAgGUGGUGGCGCgACa -3'
miRNA:   3'- cGCGUGG-GCGGCU-CGCUGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 196964 0.7 0.539279
Target:  5'- uCGCGCgCCGCCGAcGCccgaGACGGCG-CGCg -3'
miRNA:   3'- cGCGUG-GGCGGCU-CG----CUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 187058 0.7 0.539279
Target:  5'- gGCGCAgUC-CgGGGCGACGACGCUu- -3'
miRNA:   3'- -CGCGUgGGcGgCUCGCUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 39344 0.7 0.539279
Target:  5'- gGCGCccggcgGCCCGCgGGGUucuacccgGugGACGCCGu -3'
miRNA:   3'- -CGCG------UGGGCGgCUCG--------CugCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 88686 0.7 0.54855
Target:  5'- gGCGCGCCCuGCUG-G-GACGACGCaaugGCg -3'
miRNA:   3'- -CGCGUGGG-CGGCuCgCUGCUGCGg---UG- -5'
1962 5' -61.7 NC_001347.2 + 166324 0.7 0.54855
Target:  5'- uUGCGCCUGCuCGAGCGcCaAUGUCACg -3'
miRNA:   3'- cGCGUGGGCG-GCUCGCuGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 170780 0.7 0.557871
Target:  5'- uGCGCA-UCGCCGuGGCGuuGACgGCCGCu -3'
miRNA:   3'- -CGCGUgGGCGGC-UCGCugCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 197011 0.7 0.557871
Target:  5'- -gGCACUCGCUGcgacacGGgGACG-CGCCGCa -3'
miRNA:   3'- cgCGUGGGCGGC------UCgCUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 78415 0.7 0.557871
Target:  5'- gGCuGCugCCGCCGccacccGGCccGGCGGCGCC-Cg -3'
miRNA:   3'- -CG-CGugGGCGGC------UCG--CUGCUGCGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.