miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 149914 0.7 0.57664
Target:  5'- -aGC-CCCGCCGuggguuuuaAGCGGCaGuACGCCGCc -3'
miRNA:   3'- cgCGuGGGCGGC---------UCGCUG-C-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 142348 0.7 0.57664
Target:  5'- cGCGUGCUggaCGCCGAcgcccaGCGAUuaacgGACGCCGCc -3'
miRNA:   3'- -CGCGUGG---GCGGCU------CGCUG-----CUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1017 0.69 0.586079
Target:  5'- aGUGCugCggcuacgacgaCGCCGGGCcACGGCGuCCACc -3'
miRNA:   3'- -CGCGugG-----------GCGGCUCGcUGCUGC-GGUG- -5'
1962 5' -61.7 NC_001347.2 + 1620 0.69 0.592704
Target:  5'- cGCuGCaACCgGCUGGGCGugggcaccccgcgcGCGACGCUGCu -3'
miRNA:   3'- -CG-CG-UGGgCGGCUCGC--------------UGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 136198 0.69 0.595547
Target:  5'- cGCGgACUgCGCCGGGgGGCGGCgGgCACg -3'
miRNA:   3'- -CGCgUGG-GCGGCUCgCUGCUG-CgGUG- -5'
1962 5' -61.7 NC_001347.2 + 189460 0.69 0.601239
Target:  5'- aCGCGUCCGcCCGAGCGcagacggugacguCGACGCCGg -3'
miRNA:   3'- cGCGUGGGC-GGCUCGCu------------GCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 100911 0.69 0.605038
Target:  5'- cGCGCugCUuuccCCGAGCucCGACGCCucGCg -3'
miRNA:   3'- -CGCGugGGc---GGCUCGcuGCUGCGG--UG- -5'
1962 5' -61.7 NC_001347.2 + 93969 0.69 0.605038
Target:  5'- cCGC-CCCGCCGAcggugauucGUGGuCGugGCCAa -3'
miRNA:   3'- cGCGuGGGCGGCU---------CGCU-GCugCGGUg -5'
1962 5' -61.7 NC_001347.2 + 41158 0.69 0.605038
Target:  5'- cGCGCggaaAUCCGCCGcggcGGUGGCGACuggGCCGa -3'
miRNA:   3'- -CGCG----UGGGCGGC----UCGCUGCUG---CGGUg -5'
1962 5' -61.7 NC_001347.2 + 170144 0.69 0.614546
Target:  5'- aGCGguCCCGCCGuGCccagucgcgGugGACGCg-- -3'
miRNA:   3'- -CGCguGGGCGGCuCG---------CugCUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 129496 0.69 0.614546
Target:  5'- aGCGCGUCUGC--AGCG-CGGCGCCGCc -3'
miRNA:   3'- -CGCGUGGGCGgcUCGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 96809 0.69 0.614546
Target:  5'- aGC-CACCagguGCCG-GCGACuGACGCCGg -3'
miRNA:   3'- -CGcGUGGg---CGGCuCGCUG-CUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 156202 0.69 0.614546
Target:  5'- -aGCGCCCGUCaAGCucguuucgccGGCG-CGCCACg -3'
miRNA:   3'- cgCGUGGGCGGcUCG----------CUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 18465 0.69 0.614546
Target:  5'- uGCGCGCCUGCCG-GCcuuuUGACcacaugccgGCCGCg -3'
miRNA:   3'- -CGCGUGGGCGGCuCGcu--GCUG---------CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 156641 0.69 0.614546
Target:  5'- gGCGC-CgCUGCCGGGCcuCGGCcGCCGCc -3'
miRNA:   3'- -CGCGuG-GGCGGCUCGcuGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1992 0.69 0.624066
Target:  5'- aCGU-CCCGCC-AGCGGCGAgCGgCACg -3'
miRNA:   3'- cGCGuGGGCGGcUCGCUGCU-GCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 199996 0.69 0.624066
Target:  5'- aGCG-ACgUGaCGAGCuGCGACGCCGCg -3'
miRNA:   3'- -CGCgUGgGCgGCUCGcUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 38831 0.69 0.624066
Target:  5'- cCGCGCCgUGCCGAaaccacucguccGCGuCGcGCGCCGCu -3'
miRNA:   3'- cGCGUGG-GCGGCU------------CGCuGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 154931 0.69 0.624066
Target:  5'- aCGUugCUacuGCCG-GCGACGGCuccGCCGCa -3'
miRNA:   3'- cGCGugGG---CGGCuCGCUGCUG---CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 77855 0.69 0.624066
Target:  5'- gGCGCugCUgcugcaggugGCCGAGCGccugGGCGCCGu -3'
miRNA:   3'- -CGCGugGG----------CGGCUCGCug--CUGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.