miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 100483 0.66 0.772484
Target:  5'- cGCGCGCCCGgCG-GUcACGGauCCGCa -3'
miRNA:   3'- -CGCGUGGGCgGCuCGcUGCUgcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 6190 0.66 0.772484
Target:  5'- aGUGUaucgaGCUCGCCG-GCGGCGaaacaaccaGCGCCGg -3'
miRNA:   3'- -CGCG-----UGGGCGGCuCGCUGC---------UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 18351 0.66 0.772484
Target:  5'- aCGCugCgGCCGuGGCcaaGACGGC-CCGCg -3'
miRNA:   3'- cGCGugGgCGGC-UCG---CUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 158092 0.66 0.772484
Target:  5'- -aGCGCCgCGCUGcGCGGCGGCcUCAUc -3'
miRNA:   3'- cgCGUGG-GCGGCuCGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 103119 0.66 0.763709
Target:  5'- aCGCACCUGCCGcguaacauggaaGGCGuacagguaGugGCCGa -3'
miRNA:   3'- cGCGUGGGCGGC------------UCGCug------CugCGGUg -5'
1962 5' -61.7 NC_001347.2 + 85964 0.66 0.763709
Target:  5'- cGCGCgaACCCGUguaGuGCGAgcCGcCGCCACc -3'
miRNA:   3'- -CGCG--UGGGCGg--CuCGCU--GCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 105142 0.66 0.763709
Target:  5'- aCGCGCCaCGCUc-GCucUGACGCCGCg -3'
miRNA:   3'- cGCGUGG-GCGGcuCGcuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 39794 0.66 0.761056
Target:  5'- aGCGCACagCCGCCucccGGGCgcgcacccaucuagGugGACGCC-Cg -3'
miRNA:   3'- -CGCGUG--GGCGG----CUCG--------------CugCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 196567 0.66 0.754832
Target:  5'- uGUGCcaACCCGCgucGCGGCuACGCCAUg -3'
miRNA:   3'- -CGCG--UGGGCGgcuCGCUGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 130030 0.66 0.754832
Target:  5'- -aGCGCCUgGCUacGCGACGACGUCuGCg -3'
miRNA:   3'- cgCGUGGG-CGGcuCGCUGCUGCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 66161 0.66 0.754832
Target:  5'- -aGUACCUGaUCGAcCGACGGCGgCACu -3'
miRNA:   3'- cgCGUGGGC-GGCUcGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 209999 0.66 0.754832
Target:  5'- cCGCA-CCGCCGGGUcGCGGucCGCCGg -3'
miRNA:   3'- cGCGUgGGCGGCUCGcUGCU--GCGGUg -5'
1962 5' -61.7 NC_001347.2 + 200608 0.66 0.754832
Target:  5'- uUGCGCgCGUCGGGCuGCG-CGCCGu -3'
miRNA:   3'- cGCGUGgGCGGCUCGcUGCuGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 96947 0.66 0.754832
Target:  5'- cUGCACgCCGCCGugacuGCGAuaauaaCGGCGCaGCa -3'
miRNA:   3'- cGCGUG-GGCGGCu----CGCU------GCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 108130 0.66 0.754832
Target:  5'- cGCGUuuggucGCCUGCCuauguaaGGCGGCGgccgcagagggcGCGCCGCu -3'
miRNA:   3'- -CGCG------UGGGCGGc------UCGCUGC------------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 208090 0.66 0.754832
Target:  5'- cCGCugCCGCagauGGGCgcaccGACGGCggaGCCGCg -3'
miRNA:   3'- cGCGugGGCGg---CUCG-----CUGCUG---CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 193632 0.66 0.754832
Target:  5'- gGUGCAUCCcgaccaucggGCCGAGCugUGcCGCCGCu -3'
miRNA:   3'- -CGCGUGGG----------CGGCUCGcuGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 30576 0.66 0.753939
Target:  5'- cCGCACacagacgacgCGCCGGGCGgcuuccuGCGGCcgGCCGCg -3'
miRNA:   3'- cGCGUGg---------GCGGCUCGC-------UGCUG--CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 115848 0.66 0.752151
Target:  5'- -aGCGCCaCGCCG-GCGuuuucgcgcgucucAUGAUGCCAg -3'
miRNA:   3'- cgCGUGG-GCGGCuCGC--------------UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 94834 0.67 0.745862
Target:  5'- uGUaCACgCCGCUGAGC-ACGGCGCUg- -3'
miRNA:   3'- -CGcGUG-GGCGGCUCGcUGCUGCGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.