miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 229672 0.67 0.745862
Target:  5'- gGUGUGCCgGCgGGGUGugGugGCgGg -3'
miRNA:   3'- -CGCGUGGgCGgCUCGCugCugCGgUg -5'
1962 5' -61.7 NC_001347.2 + 94834 0.67 0.745862
Target:  5'- uGUaCACgCCGCUGAGC-ACGGCGCUg- -3'
miRNA:   3'- -CGcGUG-GGCGGCUCGcUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 67353 0.67 0.745862
Target:  5'- cCGCAgCCGCCGc-CGuCGcCGCCGCc -3'
miRNA:   3'- cGCGUgGGCGGCucGCuGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 38113 0.67 0.743154
Target:  5'- aCGUGCCCGUCcAGCGggcaguacccgaacACGGCGCC-Ca -3'
miRNA:   3'- cGCGUGGGCGGcUCGC--------------UGCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 12803 0.67 0.736806
Target:  5'- gGCGUuuucACUaCGCCGuG-GACGACGCCGa -3'
miRNA:   3'- -CGCG----UGG-GCGGCuCgCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 78610 0.67 0.736806
Target:  5'- gGCGCGaggacuCCaugaGCCuGGGCGcgcGCGACGCCGa -3'
miRNA:   3'- -CGCGU------GGg---CGG-CUCGC---UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 158662 0.67 0.736806
Target:  5'- gGCGC-CCCGCUGuGUcGgGGCGCgCGCu -3'
miRNA:   3'- -CGCGuGGGCGGCuCGcUgCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 190407 0.67 0.736806
Target:  5'- cGUGCAUCUGCCGAaacaccGUGugGugGUugUACg -3'
miRNA:   3'- -CGCGUGGGCGGCU------CGCugCugCG--GUG- -5'
1962 5' -61.7 NC_001347.2 + 15547 0.67 0.736806
Target:  5'- gGUGUggaaGCa-GCCGAGCG-CGAgGCCGCu -3'
miRNA:   3'- -CGCG----UGggCGGCUCGCuGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 68722 0.67 0.731333
Target:  5'- aGCGCAacgcucgucggaggCCGUgGAGCGAgUGcCGCCGCa -3'
miRNA:   3'- -CGCGUg-------------GGCGgCUCGCU-GCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 197715 0.67 0.72767
Target:  5'- -gGCAaCCGCuCGGGCcuGCGACGCgACg -3'
miRNA:   3'- cgCGUgGGCG-GCUCGc-UGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 101165 0.67 0.72767
Target:  5'- -aGCGgCUugGCCGcGGCGGCGcACGCCAUc -3'
miRNA:   3'- cgCGUgGG--CGGC-UCGCUGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 178613 0.67 0.72767
Target:  5'- uGCGCGCCauccuggaauCUGAGCGGCGGa-CCGCg -3'
miRNA:   3'- -CGCGUGGgc--------GGCUCGCUGCUgcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 160949 0.67 0.72767
Target:  5'- -aGUcCuCCGCCGcuacAGCGGCGcCGCCAUg -3'
miRNA:   3'- cgCGuG-GGCGGC----UCGCUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 156522 0.67 0.72767
Target:  5'- gGCGCGCCCGCau-GuCGGCcGCGCUuACg -3'
miRNA:   3'- -CGCGUGGGCGgcuC-GCUGcUGCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 114057 0.67 0.72767
Target:  5'- uCGCuACCCGCucacCGAGCGAaCGAUGauggcCCGCg -3'
miRNA:   3'- cGCG-UGGGCG----GCUCGCU-GCUGC-----GGUG- -5'
1962 5' -61.7 NC_001347.2 + 191971 0.67 0.72767
Target:  5'- uCGCugUCGCCGccaccgcagcGGCGGCGACGgaCgGCg -3'
miRNA:   3'- cGCGugGGCGGC----------UCGCUGCUGC--GgUG- -5'
1962 5' -61.7 NC_001347.2 + 75410 0.67 0.718463
Target:  5'- -aGCGgCgGCCGuGGCGGCGGCaGCgGCg -3'
miRNA:   3'- cgCGUgGgCGGC-UCGCUGCUG-CGgUG- -5'
1962 5' -61.7 NC_001347.2 + 17773 0.67 0.718463
Target:  5'- gGgGCACCUaucuCCGAcagcGCGACGAgCGCUGCg -3'
miRNA:   3'- -CgCGUGGGc---GGCU----CGCUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 139309 0.67 0.718463
Target:  5'- cGCGUGCCUaCCGAucugGCGGCGuuguGCGCgGCg -3'
miRNA:   3'- -CGCGUGGGcGGCU----CGCUGC----UGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.