miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 201142 0.67 0.709193
Target:  5'- -aGCACCguugacugugaCGCCacGAGUGACGACGaCGCu -3'
miRNA:   3'- cgCGUGG-----------GCGG--CUCGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 114458 0.67 0.709193
Target:  5'- uGUGuCACCCGCgcuUGAGCGGCGGacUGCUgACg -3'
miRNA:   3'- -CGC-GUGGGCG---GCUCGCUGCU--GCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 194695 0.67 0.709193
Target:  5'- uGCGUACCUGCCcGGCGAgGACa---- -3'
miRNA:   3'- -CGCGUGGGCGGcUCGCUgCUGcggug -5'
1962 5' -61.7 NC_001347.2 + 106211 0.67 0.709193
Target:  5'- uCGgGCCCGCCggccacGAGCcaGACGAgGCgGCg -3'
miRNA:   3'- cGCgUGGGCGG------CUCG--CUGCUgCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 169131 0.67 0.709193
Target:  5'- cGCGCGCCgCGCUGcAGUGGCuggaccugGGC-CCGCa -3'
miRNA:   3'- -CGCGUGG-GCGGC-UCGCUG--------CUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 89733 0.67 0.709193
Target:  5'- --cCACCCGCCGucgucgccuGCGGCGuCGgCGCa -3'
miRNA:   3'- cgcGUGGGCGGCu--------CGCUGCuGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 193889 0.67 0.709193
Target:  5'- cGCGCGagcccgucaugCCGCUGGGCGAaauugagGGCGCCGa -3'
miRNA:   3'- -CGCGUg----------GGCGGCUCGCUg------CUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 197326 0.67 0.708262
Target:  5'- cGCGCACCCGaCG-GCGguuugaauuuagACGauuuuauGCGCCGCc -3'
miRNA:   3'- -CGCGUGGGCgGCuCGC------------UGC-------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1310 0.67 0.703602
Target:  5'- cGCGCGggugaCGCCGcgcagccagaugaacGGCGugGGCGCgACg -3'
miRNA:   3'- -CGCGUgg---GCGGC---------------UCGCugCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 64964 0.67 0.703602
Target:  5'- gGCuGCGCCCGuuGGugaauguuaccagacGCGAUGGC-CCGCu -3'
miRNA:   3'- -CG-CGUGGGCggCU---------------CGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1928 0.67 0.699865
Target:  5'- gGUGCuGCCCGCgCGGuggcugggcugcGCGGCGGgGCCGg -3'
miRNA:   3'- -CGCG-UGGGCG-GCU------------CGCUGCUgCGGUg -5'
1962 5' -61.7 NC_001347.2 + 15363 0.67 0.699865
Target:  5'- cGCGuUGCCCGauGAGCGACGcgaGCGCgaGCg -3'
miRNA:   3'- -CGC-GUGGGCggCUCGCUGC---UGCGg-UG- -5'
1962 5' -61.7 NC_001347.2 + 152701 0.67 0.699865
Target:  5'- cGCGCACgaUGuuGAGCG-UGACGCUg- -3'
miRNA:   3'- -CGCGUGg-GCggCUCGCuGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 157593 0.67 0.69893
Target:  5'- uGCGCcgucugcggcucuACCCGcCCGAGCGGC--UGCaCGCg -3'
miRNA:   3'- -CGCG-------------UGGGC-GGCUCGCUGcuGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 187456 0.68 0.690488
Target:  5'- cGUGCGCCacgauGCCGAGauCGugGaACGCgCGCu -3'
miRNA:   3'- -CGCGUGGg----CGGCUC--GCugC-UGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 40190 0.68 0.690488
Target:  5'- cGCGCACaCCGCCGAcacACccCGCCACc -3'
miRNA:   3'- -CGCGUG-GGCGGCUcgcUGcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 81568 0.68 0.690488
Target:  5'- aGCgGCGgCaacaGCC-AGCGACGAuCGCCGCc -3'
miRNA:   3'- -CG-CGUgGg---CGGcUCGCUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 87616 0.68 0.690488
Target:  5'- cCGUGCCCaCC-AGCGACGGCgGCUGCu -3'
miRNA:   3'- cGCGUGGGcGGcUCGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 7632 0.68 0.681069
Target:  5'- cCGCG-CCGUCGuuGuUGACGAUGCCGCa -3'
miRNA:   3'- cGCGUgGGCGGCu-C-GCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 157219 0.68 0.671616
Target:  5'- uGCGCugCaGCCGgaggaAGCGGCGguagaaACGUCGCa -3'
miRNA:   3'- -CGCGugGgCGGC-----UCGCUGC------UGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.