miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 157219 0.68 0.671616
Target:  5'- uGCGCugCaGCCGgaggaAGCGGCGguagaaACGUCGCa -3'
miRNA:   3'- -CGCGugGgCGGC-----UCGCUGC------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 196143 0.68 0.671616
Target:  5'- cCGCuGCCUGCCG-GCGGCccugUGCCGCg -3'
miRNA:   3'- cGCG-UGGGCGGCuCGCUGcu--GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 39077 0.68 0.662134
Target:  5'- cGCGC-CCaCGCCGuucaucuggcuGCG-CGGCGUCACc -3'
miRNA:   3'- -CGCGuGG-GCGGCu----------CGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 88625 0.68 0.662134
Target:  5'- uGCGCgGCCUGCaccgcggcuUGAGCGGCGGC-CUGCg -3'
miRNA:   3'- -CGCG-UGGGCG---------GCUCGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 125835 0.68 0.652632
Target:  5'- aGCuGCAUCgUGCCGGcGCGACGAUGaCGCu -3'
miRNA:   3'- -CG-CGUGG-GCGGCU-CGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 112873 0.68 0.652632
Target:  5'- cGgGCA-CUGCCGAGCGACuGGCcCCAa -3'
miRNA:   3'- -CgCGUgGGCGGCUCGCUG-CUGcGGUg -5'
1962 5' -61.7 NC_001347.2 + 80577 0.68 0.652632
Target:  5'- aGCGCAguaaccaaaaguCCaCGUCGuuGCGGCGA-GCCACg -3'
miRNA:   3'- -CGCGU------------GG-GCGGCu-CGCUGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 148573 0.68 0.652632
Target:  5'- cCGCuauguuuuucaACCCGUaucUGAGCGGCGGCGUgACc -3'
miRNA:   3'- cGCG-----------UGGGCG---GCUCGCUGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 117850 0.68 0.652632
Target:  5'- -gGCGgCCGCUGAcGCGGCGAcCGCguCa -3'
miRNA:   3'- cgCGUgGGCGGCU-CGCUGCU-GCGguG- -5'
1962 5' -61.7 NC_001347.2 + 158181 0.68 0.652632
Target:  5'- cGCGCGCUCGCUG-GUGGcCGugGUCu- -3'
miRNA:   3'- -CGCGUGGGCGGCuCGCU-GCugCGGug -5'
1962 5' -61.7 NC_001347.2 + 150634 0.68 0.651681
Target:  5'- -gGCGCCgGCgGuacuGCGGCGguuucguaccaggGCGCCACg -3'
miRNA:   3'- cgCGUGGgCGgCu---CGCUGC-------------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 80939 0.68 0.649778
Target:  5'- cCGCGaaaccacccaccacCCCGUgGAGCGGacuaccacCGGCGCCGCc -3'
miRNA:   3'- cGCGU--------------GGGCGgCUCGCU--------GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 107613 0.68 0.643115
Target:  5'- cCGUACUgGU-GAGCGACGagaacgGCGCCACg -3'
miRNA:   3'- cGCGUGGgCGgCUCGCUGC------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 197686 0.68 0.643115
Target:  5'- aGCGCGCUgCGCaGGGCaGACuGCGUCACg -3'
miRNA:   3'- -CGCGUGG-GCGgCUCG-CUGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128665 0.68 0.643115
Target:  5'- aCGCGCCCguGCCGc-CGGCGACcGCCGu -3'
miRNA:   3'- cGCGUGGG--CGGCucGCUGCUG-CGGUg -5'
1962 5' -61.7 NC_001347.2 + 118161 0.69 0.633591
Target:  5'- uGCGCACCCGguccaUGAGC-ACGuccucGCGCCAg -3'
miRNA:   3'- -CGCGUGGGCg----GCUCGcUGC-----UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 62744 0.69 0.633591
Target:  5'- cGCGCcgcCCCGUgacgaCGAGCGGCGGCcgaccCCGCc -3'
miRNA:   3'- -CGCGu--GGGCG-----GCUCGCUGCUGc----GGUG- -5'
1962 5' -61.7 NC_001347.2 + 103802 0.69 0.632638
Target:  5'- uGCGCGgC-GuuGAGCGACGAcauuaaaCGCUACg -3'
miRNA:   3'- -CGCGUgGgCggCUCGCUGCU-------GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 154931 0.69 0.624066
Target:  5'- aCGUugCUacuGCCG-GCGACGGCuccGCCGCa -3'
miRNA:   3'- cGCGugGG---CGGCuCGCUGCUG---CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 1992 0.69 0.624066
Target:  5'- aCGU-CCCGCC-AGCGGCGAgCGgCACg -3'
miRNA:   3'- cGCGuGGGCGGcUCGCUGCU-GCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.