miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 15547 0.67 0.736806
Target:  5'- gGUGUggaaGCa-GCCGAGCG-CGAgGCCGCu -3'
miRNA:   3'- -CGCG----UGggCGGCUCGCuGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 15592 0.66 0.781151
Target:  5'- aCGgGCCCGCgGcugcauugccuGGUGACGACGCg-- -3'
miRNA:   3'- cGCgUGGGCGgC-----------UCGCUGCUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 17342 0.66 0.789701
Target:  5'- cGCGUAUggCCGCCggccacgaGAGCGAUGACGaCGa -3'
miRNA:   3'- -CGCGUG--GGCGG--------CUCGCUGCUGCgGUg -5'
1962 5' -61.7 NC_001347.2 + 17773 0.67 0.718463
Target:  5'- gGgGCACCUaucuCCGAcagcGCGACGAgCGCUGCg -3'
miRNA:   3'- -CgCGUGGGc---GGCU----CGCUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 18351 0.66 0.772484
Target:  5'- aCGCugCgGCCGuGGCcaaGACGGC-CCGCg -3'
miRNA:   3'- cGCGugGgCGGC-UCG---CUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 18465 0.69 0.614546
Target:  5'- uGCGCGCCUGCCG-GCcuuuUGACcacaugccgGCCGCg -3'
miRNA:   3'- -CGCGUGGGCGGCuCGcu--GCUG---------CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 28246 0.66 0.79813
Target:  5'- cGCGUACUgGCUGGaaCGuCGGCGCCGa -3'
miRNA:   3'- -CGCGUGGgCGGCUc-GCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 30576 0.66 0.753939
Target:  5'- cCGCACacagacgacgCGCCGGGCGgcuuccuGCGGCcgGCCGCg -3'
miRNA:   3'- cGCGUGg---------GCGGCUCGC-------UGCUG--CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 38002 0.72 0.458744
Target:  5'- gGCaGCAgCCGCCGcgcggccucGGCGGCGgGCGCCGa -3'
miRNA:   3'- -CG-CGUgGGCGGC---------UCGCUGC-UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 38113 0.67 0.743154
Target:  5'- aCGUGCCCGUCcAGCGggcaguacccgaacACGGCGCC-Ca -3'
miRNA:   3'- cGCGUGGGCGGcUCGC--------------UGCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 38307 0.73 0.377383
Target:  5'- cGCGCcCCCGCCG-GCGGCGccguACgGCUGCg -3'
miRNA:   3'- -CGCGuGGGCGGCuCGCUGC----UG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 38412 0.76 0.24595
Target:  5'- cGUGcCGCUCGCCGcuGGCGGCGACGUCGu -3'
miRNA:   3'- -CGC-GUGGGCGGC--UCGCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 38696 0.74 0.362314
Target:  5'- gGCGCAgcuCCCGuCCGAGCGcCGuCGCCu- -3'
miRNA:   3'- -CGCGU---GGGC-GGCUCGCuGCuGCGGug -5'
1962 5' -61.7 NC_001347.2 + 38831 0.69 0.624066
Target:  5'- cCGCGCCgUGCCGAaaccacucguccGCGuCGcGCGCCGCu -3'
miRNA:   3'- cGCGUGG-GCGGCU------------CGCuGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 39077 0.68 0.662134
Target:  5'- cGCGC-CCaCGCCGuucaucuggcuGCG-CGGCGUCACc -3'
miRNA:   3'- -CGCGuGG-GCGGCu----------CGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 39344 0.7 0.539279
Target:  5'- gGCGCccggcgGCCCGCgGGGUucuacccgGugGACGCCGu -3'
miRNA:   3'- -CGCG------UGGGCGgCUCG--------CugCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 39794 0.66 0.761056
Target:  5'- aGCGCACagCCGCCucccGGGCgcgcacccaucuagGugGACGCC-Cg -3'
miRNA:   3'- -CGCGUG--GGCGG----CUCG--------------CugCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 40190 0.68 0.690488
Target:  5'- cGCGCACaCCGCCGAcacACccCGCCACc -3'
miRNA:   3'- -CGCGUG-GGCGGCUcgcUGcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 40370 0.66 0.793088
Target:  5'- cGCGCcccgacacacccaaaACaCCGCCG-GUG-CGGgGCCGCg -3'
miRNA:   3'- -CGCG---------------UG-GGCGGCuCGCuGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 40605 0.66 0.79813
Target:  5'- aGCGUuCUgGCCGc-CGGCGAUGCCGg -3'
miRNA:   3'- -CGCGuGGgCGGCucGCUGCUGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.