miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 41158 0.69 0.605038
Target:  5'- cGCGCggaaAUCCGCCGcggcGGUGGCGACuggGCCGa -3'
miRNA:   3'- -CGCG----UGGGCGGC----UCGCUGCUG---CGGUg -5'
1962 5' -61.7 NC_001347.2 + 41344 0.66 0.789701
Target:  5'- cGCGCACaCGauuCCGAG-GACGGCGUCu- -3'
miRNA:   3'- -CGCGUGgGC---GGCUCgCUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 60462 0.74 0.333451
Target:  5'- cCGCACCUGCC--GCGuCGACGCCGa -3'
miRNA:   3'- cGCGUGGGCGGcuCGCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 62744 0.69 0.633591
Target:  5'- cGCGCcgcCCCGUgacgaCGAGCGGCGGCcgaccCCGCc -3'
miRNA:   3'- -CGCGu--GGGCG-----GCUCGCUGCUGc----GGUG- -5'
1962 5' -61.7 NC_001347.2 + 63008 0.74 0.332752
Target:  5'- aGCGCGCCCGCCacuGCGgaagucugucuggGCGACGCUcuGCc -3'
miRNA:   3'- -CGCGUGGGCGGcu-CGC-------------UGCUGCGG--UG- -5'
1962 5' -61.7 NC_001347.2 + 63256 0.75 0.319665
Target:  5'- cGCuGCGCCCGCCGuggccaccaacGGCGGuaACGCCACc -3'
miRNA:   3'- -CG-CGUGGGCGGC-----------UCGCUgcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 64964 0.67 0.703602
Target:  5'- gGCuGCGCCCGuuGGugaauguuaccagacGCGAUGGC-CCGCu -3'
miRNA:   3'- -CG-CGUGGGCggCU---------------CGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 65194 0.66 0.788852
Target:  5'- gGCGaugGCUCGCCGGccguguacacguGCGugGACgaccuguGCCGCg -3'
miRNA:   3'- -CGCg--UGGGCGGCU------------CGCugCUG-------CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 66161 0.66 0.754832
Target:  5'- -aGUACCUGaUCGAcCGACGGCGgCACu -3'
miRNA:   3'- cgCGUGGGC-GGCUcGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 67353 0.67 0.745862
Target:  5'- cCGCAgCCGCCGc-CGuCGcCGCCGCc -3'
miRNA:   3'- cGCGUgGGCGGCucGCuGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 68722 0.67 0.731333
Target:  5'- aGCGCAacgcucgucggaggCCGUgGAGCGAgUGcCGCCGCa -3'
miRNA:   3'- -CGCGUg-------------GGCGgCUCGCU-GCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 75410 0.67 0.718463
Target:  5'- -aGCGgCgGCCGuGGCGGCGGCaGCgGCg -3'
miRNA:   3'- cgCGUgGgCGGC-UCGCUGCUG-CGgUG- -5'
1962 5' -61.7 NC_001347.2 + 76983 0.73 0.377383
Target:  5'- -gGCGCCCGCCGugccGGUGACGAgcaGCgCGCg -3'
miRNA:   3'- cgCGUGGGCGGC----UCGCUGCUg--CG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 77855 0.69 0.624066
Target:  5'- gGCGCugCUgcugcaggugGCCGAGCGccugGGCGCCGu -3'
miRNA:   3'- -CGCGugGG----------CGGCUCGCug--CUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 78354 0.68 0.671616
Target:  5'- gGCGgACCCGgCGuGgugggaccCGGCGGCGCCGu -3'
miRNA:   3'- -CGCgUGGGCgGCuC--------GCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 78415 0.7 0.557871
Target:  5'- gGCuGCugCCGCCGccacccGGCccGGCGGCGCC-Cg -3'
miRNA:   3'- -CG-CGugGGCGGC------UCG--CUGCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 78610 0.67 0.736806
Target:  5'- gGCGCGaggacuCCaugaGCCuGGGCGcgcGCGACGCCGa -3'
miRNA:   3'- -CGCGU------GGg---CGG-CUCGC---UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 80577 0.68 0.652632
Target:  5'- aGCGCAguaaccaaaaguCCaCGUCGuuGCGGCGA-GCCACg -3'
miRNA:   3'- -CGCGU------------GG-GCGGCu-CGCUGCUgCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 80939 0.68 0.649778
Target:  5'- cCGCGaaaccacccaccacCCCGUgGAGCGGacuaccacCGGCGCCGCc -3'
miRNA:   3'- cGCGU--------------GGGCGgCUCGCU--------GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 81568 0.68 0.690488
Target:  5'- aGCgGCGgCaacaGCC-AGCGACGAuCGCCGCc -3'
miRNA:   3'- -CG-CGUgGg---CGGcUCGCUGCU-GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.