miRNA display CGI


Results 61 - 80 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 81721 0.66 0.781151
Target:  5'- aGCuuGCCgGCCGAGCccACGAUGUCGg -3'
miRNA:   3'- -CGcgUGGgCGGCUCGc-UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 82579 0.66 0.786296
Target:  5'- cGCGCACCacgaacgugugaaGCCGcggcucGGC-ACGGcCGCCACc -3'
miRNA:   3'- -CGCGUGGg------------CGGC------UCGcUGCU-GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 82884 0.75 0.30631
Target:  5'- gGCGCGCCCccaucgccucCCGAGCGAgCGGgcCGCCGCu -3'
miRNA:   3'- -CGCGUGGGc---------GGCUCGCU-GCU--GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 85524 0.77 0.240489
Target:  5'- gGCGCGCgCGCuUGAGCGugGcccugaagaGCGCCGCg -3'
miRNA:   3'- -CGCGUGgGCG-GCUCGCugC---------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 85964 0.66 0.763709
Target:  5'- cGCGCgaACCCGUguaGuGCGAgcCGcCGCCACc -3'
miRNA:   3'- -CGCG--UGGGCGg--CuCGCU--GCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 87616 0.68 0.690488
Target:  5'- cCGUGCCCaCC-AGCGACGGCgGCUGCu -3'
miRNA:   3'- cGCGUGGGcGGcUCGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 88244 0.7 0.530062
Target:  5'- uCGCugCCGCCGGugaagagagcGCGGCGuACGCUg- -3'
miRNA:   3'- cGCGugGGCGGCU----------CGCUGC-UGCGGug -5'
1962 5' -61.7 NC_001347.2 + 88366 0.71 0.476119
Target:  5'- gGCGCugCCG-CGAGaCGACGugGaCgGCa -3'
miRNA:   3'- -CGCGugGGCgGCUC-GCUGCugC-GgUG- -5'
1962 5' -61.7 NC_001347.2 + 88625 0.68 0.662134
Target:  5'- uGCGCgGCCUGCaccgcggcuUGAGCGGCGGC-CUGCg -3'
miRNA:   3'- -CGCG-UGGGCG---------GCUCGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 88686 0.7 0.54855
Target:  5'- gGCGCGCCCuGCUG-G-GACGACGCaaugGCg -3'
miRNA:   3'- -CGCGUGGG-CGGCuCgCUGCUGCGg---UG- -5'
1962 5' -61.7 NC_001347.2 + 89733 0.67 0.709193
Target:  5'- --cCACCCGCCGucgucgccuGCGGCGuCGgCGCa -3'
miRNA:   3'- cgcGUGGGCGGCu--------CGCUGCuGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 93212 0.73 0.392867
Target:  5'- cGCGCuggcgacgaGCUCGCUGAGCGgcaGCGGCGgCACc -3'
miRNA:   3'- -CGCG---------UGGGCGGCUCGC---UGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 93969 0.69 0.605038
Target:  5'- cCGC-CCCGCCGAcggugauucGUGGuCGugGCCAa -3'
miRNA:   3'- cGCGuGGGCGGCU---------CGCU-GCugCGGUg -5'
1962 5' -61.7 NC_001347.2 + 94834 0.67 0.745862
Target:  5'- uGUaCACgCCGCUGAGC-ACGGCGCUg- -3'
miRNA:   3'- -CGcGUG-GGCGGCUCGcUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 95879 0.72 0.450184
Target:  5'- -aGCACCUGCacagcuucacgGAGaagGGCGACGCCACg -3'
miRNA:   3'- cgCGUGGGCGg----------CUCg--CUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 96291 0.66 0.79813
Target:  5'- -aGCcaUCGCCGAGUGcGCGGCGCaCAUg -3'
miRNA:   3'- cgCGugGGCGGCUCGC-UGCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 96809 0.69 0.614546
Target:  5'- aGC-CACCagguGCCG-GCGACuGACGCCGg -3'
miRNA:   3'- -CGcGUGGg---CGGCuCGCUG-CUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 96947 0.66 0.754832
Target:  5'- cUGCACgCCGCCGugacuGCGAuaauaaCGGCGCaGCa -3'
miRNA:   3'- cGCGUG-GGCGGCu----CGCU------GCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 97517 0.74 0.326504
Target:  5'- gGCGCGCgCCGCCGAGauuCGuCGCUGCa -3'
miRNA:   3'- -CGCGUG-GGCGGCUCgcuGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 99147 0.72 0.416853
Target:  5'- gGCGCGCguaCGCCGAGaccCGACGCgGCg -3'
miRNA:   3'- -CGCGUGg--GCGGCUCgcuGCUGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.