miRNA display CGI


Results 81 - 100 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 100483 0.66 0.772484
Target:  5'- cGCGCGCCCGgCG-GUcACGGauCCGCa -3'
miRNA:   3'- -CGCGUGGGCgGCuCGcUGCUgcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 100863 0.66 0.788852
Target:  5'- aGCGuCACa-GCCGAgGCGGCGcggcgcaGCGCCGg -3'
miRNA:   3'- -CGC-GUGggCGGCU-CGCUGC-------UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 100911 0.69 0.605038
Target:  5'- cGCGCugCUuuccCCGAGCucCGACGCCucGCg -3'
miRNA:   3'- -CGCGugGGc---GGCUCGcuGCUGCGG--UG- -5'
1962 5' -61.7 NC_001347.2 + 101165 0.67 0.72767
Target:  5'- -aGCGgCUugGCCGcGGCGGCGcACGCCAUc -3'
miRNA:   3'- cgCGUgGG--CGGC-UCGCUGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 103119 0.66 0.763709
Target:  5'- aCGCACCUGCCGcguaacauggaaGGCGuacagguaGugGCCGa -3'
miRNA:   3'- cGCGUGGGCGGC------------UCGCug------CugCGGUg -5'
1962 5' -61.7 NC_001347.2 + 103802 0.69 0.632638
Target:  5'- uGCGCGgC-GuuGAGCGACGAcauuaaaCGCUACg -3'
miRNA:   3'- -CGCGUgGgCggCUCGCUGCU-------GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 105142 0.66 0.763709
Target:  5'- aCGCGCCaCGCUc-GCucUGACGCCGCg -3'
miRNA:   3'- cGCGUGG-GCGGcuCGcuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 106211 0.67 0.709193
Target:  5'- uCGgGCCCGCCggccacGAGCcaGACGAgGCgGCg -3'
miRNA:   3'- cGCgUGGGCGG------CUCG--CUGCUgCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 106290 0.72 0.433332
Target:  5'- cGC-CGCCaaCGCCGAGCucuguCGGCGCCGCc -3'
miRNA:   3'- -CGcGUGG--GCGGCUCGcu---GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 107613 0.68 0.643115
Target:  5'- cCGUACUgGU-GAGCGACGagaacgGCGCCACg -3'
miRNA:   3'- cGCGUGGgCGgCUCGCUGC------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 108130 0.66 0.754832
Target:  5'- cGCGUuuggucGCCUGCCuauguaaGGCGGCGgccgcagagggcGCGCCGCu -3'
miRNA:   3'- -CGCG------UGGGCGGc------UCGCUGC------------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 109451 0.76 0.280893
Target:  5'- aGCGCAagacgcCCCGCgucaccGGCGGCGGCGCCAUg -3'
miRNA:   3'- -CGCGU------GGGCGgc----UCGCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 110858 0.7 0.539279
Target:  5'- aCGCAUCgCGCCGAgGUGGUGGCGCgACa -3'
miRNA:   3'- cGCGUGG-GCGGCU-CGCUGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 112873 0.68 0.652632
Target:  5'- cGgGCA-CUGCCGAGCGACuGGCcCCAa -3'
miRNA:   3'- -CgCGUgGGCGGCUCGCUG-CUGcGGUg -5'
1962 5' -61.7 NC_001347.2 + 113179 0.74 0.354938
Target:  5'- cGCGCGCCCcaGCCGc-CGGCGugGCgGCc -3'
miRNA:   3'- -CGCGUGGG--CGGCucGCUGCugCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 114057 0.67 0.72767
Target:  5'- uCGCuACCCGCucacCGAGCGAaCGAUGauggcCCGCg -3'
miRNA:   3'- cGCG-UGGGCG----GCUCGCU-GCUGC-----GGUG- -5'
1962 5' -61.7 NC_001347.2 + 114458 0.67 0.709193
Target:  5'- uGUGuCACCCGCgcuUGAGCGGCGGacUGCUgACg -3'
miRNA:   3'- -CGC-GUGGGCG---GCUCGCUGCU--GCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 115848 0.66 0.752151
Target:  5'- -aGCGCCaCGCCG-GCGuuuucgcgcgucucAUGAUGCCAg -3'
miRNA:   3'- cgCGUGG-GCGGCuCGC--------------UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 116644 0.66 0.79813
Target:  5'- uUGCuCuuGCUGAGCugcaugagcACGGCGCCGCc -3'
miRNA:   3'- cGCGuGggCGGCUCGc--------UGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 116891 0.72 0.416853
Target:  5'- cGCGCGCCCcCCGGGCaACc-CGCCGCc -3'
miRNA:   3'- -CGCGUGGGcGGCUCGcUGcuGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.