miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 229672 0.67 0.745862
Target:  5'- gGUGUGCCgGCgGGGUGugGugGCgGg -3'
miRNA:   3'- -CGCGUGGgCGgCUCGCugCugCGgUg -5'
1962 5' -61.7 NC_001347.2 + 209999 0.66 0.754832
Target:  5'- cCGCA-CCGCCGGGUcGCGGucCGCCGg -3'
miRNA:   3'- cGCGUgGGCGGCUCGcUGCU--GCGGUg -5'
1962 5' -61.7 NC_001347.2 + 209779 0.66 0.775964
Target:  5'- uGCGCuucGgCCGCCGGGUucuGucucggaacccacguGCGACGCCAa -3'
miRNA:   3'- -CGCG---UgGGCGGCUCG---C---------------UGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 208852 0.71 0.484928
Target:  5'- -aGCGCCCGCCG-GCGAuguaacagcUGGCGUCGu -3'
miRNA:   3'- cgCGUGGGCGGCuCGCU---------GCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 208090 0.66 0.754832
Target:  5'- cCGCugCCGCagauGGGCgcaccGACGGCggaGCCGCg -3'
miRNA:   3'- cGCGugGGCGg---CUCG-----CUGCUG---CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 201142 0.67 0.709193
Target:  5'- -aGCACCguugacugugaCGCCacGAGUGACGACGaCGCu -3'
miRNA:   3'- cgCGUGG-----------GCGG--CUCGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 200608 0.66 0.754832
Target:  5'- uUGCGCgCGUCGGGCuGCG-CGCCGu -3'
miRNA:   3'- cGCGUGgGCGGCUCGcUGCuGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 199996 0.69 0.624066
Target:  5'- aGCG-ACgUGaCGAGCuGCGACGCCGCg -3'
miRNA:   3'- -CGCgUGgGCgGCUCGcUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 199716 0.76 0.251514
Target:  5'- gGCGCGCCCGCUGcgaucuGCGGuugcCGACGCgACg -3'
miRNA:   3'- -CGCGUGGGCGGCu-----CGCU----GCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 197715 0.67 0.72767
Target:  5'- -gGCAaCCGCuCGGGCcuGCGACGCgACg -3'
miRNA:   3'- cgCGUgGGCG-GCUCGc-UGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 197686 0.68 0.643115
Target:  5'- aGCGCGCUgCGCaGGGCaGACuGCGUCACg -3'
miRNA:   3'- -CGCGUGG-GCGgCUCG-CUGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 197326 0.67 0.708262
Target:  5'- cGCGCACCCGaCG-GCGguuugaauuuagACGauuuuauGCGCCGCc -3'
miRNA:   3'- -CGCGUGGGCgGCuCGC------------UGC-------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 197011 0.7 0.557871
Target:  5'- -gGCACUCGCUGcgacacGGgGACG-CGCCGCa -3'
miRNA:   3'- cgCGUGGGCGGC------UCgCUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 196964 0.7 0.539279
Target:  5'- uCGCGCgCCGCCGAcGCccgaGACGGCG-CGCg -3'
miRNA:   3'- cGCGUG-GGCGGCU-CG----CUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 196567 0.66 0.754832
Target:  5'- uGUGCcaACCCGCgucGCGGCuACGCCAUg -3'
miRNA:   3'- -CGCG--UGGGCGgcuCGCUGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 196447 0.71 0.493815
Target:  5'- cGC-CACCUcacgGCCG-GCGACGugGcCCGCg -3'
miRNA:   3'- -CGcGUGGG----CGGCuCGCUGCugC-GGUG- -5'
1962 5' -61.7 NC_001347.2 + 196143 0.68 0.671616
Target:  5'- cCGCuGCCUGCCG-GCGGCccugUGCCGCg -3'
miRNA:   3'- cGCG-UGGGCGGCuCGCUGcu--GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 194695 0.67 0.709193
Target:  5'- uGCGUACCUGCCcGGCGAgGACa---- -3'
miRNA:   3'- -CGCGUGGGCGGcUCGCUgCUGcggug -5'
1962 5' -61.7 NC_001347.2 + 193889 0.67 0.709193
Target:  5'- cGCGCGagcccgucaugCCGCUGGGCGAaauugagGGCGCCGa -3'
miRNA:   3'- -CGCGUg----------GGCGGCUCGCUg------CUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 193632 0.66 0.754832
Target:  5'- gGUGCAUCCcgaccaucggGCCGAGCugUGcCGCCGCu -3'
miRNA:   3'- -CGCGUGGG----------CGGCUCGcuGCuGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.