miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 193227 0.66 0.781151
Target:  5'- cGCGCgACuuGgCCGAccuguGCGuGCGACGCgACu -3'
miRNA:   3'- -CGCG-UGggC-GGCU-----CGC-UGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 192577 0.73 0.392867
Target:  5'- aCGCGCCUGUCaGGGCGAUGACGaCAUc -3'
miRNA:   3'- cGCGUGGGCGG-CUCGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 191971 0.67 0.72767
Target:  5'- uCGCugUCGCCGccaccgcagcGGCGGCGACGgaCgGCg -3'
miRNA:   3'- cGCGugGGCGGC----------UCGCUGCUGC--GgUG- -5'
1962 5' -61.7 NC_001347.2 + 190407 0.67 0.736806
Target:  5'- cGUGCAUCUGCCGAaacaccGUGugGugGUugUACg -3'
miRNA:   3'- -CGCGUGGGCGGCU------CGCugCugCG--GUG- -5'
1962 5' -61.7 NC_001347.2 + 189460 0.69 0.601239
Target:  5'- aCGCGUCCGcCCGAGCGcagacggugacguCGACGCCGg -3'
miRNA:   3'- cGCGUGGGC-GGCUCGCu------------GCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 188854 0.66 0.781151
Target:  5'- aCGUuCCUGCUG-GCGcCGGCGCUGCc -3'
miRNA:   3'- cGCGuGGGCGGCuCGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 187977 0.77 0.213708
Target:  5'- cGCGCGCUCGCCGucguuggaguuuGaCGAUGACGCCAa -3'
miRNA:   3'- -CGCGUGGGCGGCu-----------C-GCUGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 187456 0.68 0.690488
Target:  5'- cGUGCGCCacgauGCCGAGauCGugGaACGCgCGCu -3'
miRNA:   3'- -CGCGUGGg----CGGCUC--GCugC-UGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 187058 0.7 0.539279
Target:  5'- gGCGCAgUC-CgGGGCGACGACGCUu- -3'
miRNA:   3'- -CGCGUgGGcGgCUCGCUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 185136 0.66 0.781151
Target:  5'- -aGCAgCCGCCGGGCGGC-ACGg--- -3'
miRNA:   3'- cgCGUgGGCGGCUCGCUGcUGCggug -5'
1962 5' -61.7 NC_001347.2 + 178613 0.67 0.72767
Target:  5'- uGCGCGCCauccuggaauCUGAGCGGCGGa-CCGCg -3'
miRNA:   3'- -CGCGUGGgc--------GGCUCGCUGCUgcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 176338 0.72 0.424222
Target:  5'- uGUGUucuCCUGCCGAGaCGACGGuaacaacCGCCGCc -3'
miRNA:   3'- -CGCGu--GGGCGGCUC-GCUGCU-------GCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 174152 0.66 0.787149
Target:  5'- aGCGaCGuCCCGCgCGgaucggacacuuuaGGCGGCGcaGCGCCAg -3'
miRNA:   3'- -CGC-GU-GGGCG-GC--------------UCGCUGC--UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 172142 0.75 0.299795
Target:  5'- gGCGCAUCUGUgGGGCG-UGACGCCGu -3'
miRNA:   3'- -CGCGUGGGCGgCUCGCuGCUGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 170780 0.7 0.557871
Target:  5'- uGCGCA-UCGCCGuGGCGuuGACgGCCGCu -3'
miRNA:   3'- -CGCGUgGGCGGC-UCGCugCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 170144 0.69 0.614546
Target:  5'- aGCGguCCCGCCGuGCccagucgcgGugGACGCg-- -3'
miRNA:   3'- -CGCguGGGCGGCuCG---------CugCUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 169131 0.67 0.709193
Target:  5'- cGCGCGCCgCGCUGcAGUGGCuggaccugGGC-CCGCa -3'
miRNA:   3'- -CGCGUGG-GCGGC-UCGCUG--------CUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 166324 0.7 0.54855
Target:  5'- uUGCGCCUGCuCGAGCGcCaAUGUCACg -3'
miRNA:   3'- cGCGUGGGCG-GCUCGCuGcUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 166283 0.71 0.46739
Target:  5'- aGCGCGCguugcaCCGCgGuaaCGACGGCGCCAUu -3'
miRNA:   3'- -CGCGUG------GGCGgCuc-GCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 160949 0.67 0.72767
Target:  5'- -aGUcCuCCGCCGcuacAGCGGCGcCGCCAUg -3'
miRNA:   3'- cgCGuG-GGCGGC----UCGCUGCuGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.