miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 158662 0.67 0.736806
Target:  5'- gGCGC-CCCGCUGuGUcGgGGCGCgCGCu -3'
miRNA:   3'- -CGCGuGGGCGGCuCGcUgCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 158181 0.68 0.652632
Target:  5'- cGCGCGCUCGCUG-GUGGcCGugGUCu- -3'
miRNA:   3'- -CGCGUGGGCGGCuCGCU-GCugCGGug -5'
1962 5' -61.7 NC_001347.2 + 158092 0.66 0.772484
Target:  5'- -aGCGCCgCGCUGcGCGGCGGCcUCAUc -3'
miRNA:   3'- cgCGUGG-GCGGCuCGCUGCUGcGGUG- -5'
1962 5' -61.7 NC_001347.2 + 157593 0.67 0.69893
Target:  5'- uGCGCcgucugcggcucuACCCGcCCGAGCGGC--UGCaCGCg -3'
miRNA:   3'- -CGCG-------------UGGGC-GGCUCGCUGcuGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 157219 0.68 0.671616
Target:  5'- uGCGCugCaGCCGgaggaAGCGGCGguagaaACGUCGCa -3'
miRNA:   3'- -CGCGugGgCGGC-----UCGCUGC------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 156641 0.69 0.614546
Target:  5'- gGCGC-CgCUGCCGGGCcuCGGCcGCCGCc -3'
miRNA:   3'- -CGCGuG-GGCGGCUCGcuGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 156522 0.67 0.72767
Target:  5'- gGCGCGCCCGCau-GuCGGCcGCGCUuACg -3'
miRNA:   3'- -CGCGUGGGCGgcuC-GCUGcUGCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 156202 0.69 0.614546
Target:  5'- -aGCGCCCGUCaAGCucguuucgccGGCG-CGCCACg -3'
miRNA:   3'- cgCGUGGGCGGcUCG----------CUGCuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 154931 0.69 0.624066
Target:  5'- aCGUugCUacuGCCG-GCGACGGCuccGCCGCa -3'
miRNA:   3'- cGCGugGG---CGGCuCGCUGCUG---CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 153862 0.82 0.107791
Target:  5'- cGUGUGCCgCGCCGAGCGGCGACGUgcauuCGCg -3'
miRNA:   3'- -CGCGUGG-GCGGCUCGCUGCUGCG-----GUG- -5'
1962 5' -61.7 NC_001347.2 + 153767 0.66 0.79813
Target:  5'- uCGCGCCagugCGCCGu----CGACGCCGCu -3'
miRNA:   3'- cGCGUGG----GCGGCucgcuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 153355 0.7 0.524559
Target:  5'- aGCGCAag-GCCGAGCGucguucgcgcggcguGCGcACGCCGCu -3'
miRNA:   3'- -CGCGUgggCGGCUCGC---------------UGC-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 153243 0.71 0.502775
Target:  5'- cGCGCGUCgGCCG-GCGACGGCGguUCGCc -3'
miRNA:   3'- -CGCGUGGgCGGCuCGCUGCUGC--GGUG- -5'
1962 5' -61.7 NC_001347.2 + 152701 0.67 0.699865
Target:  5'- cGCGCACgaUGuuGAGCG-UGACGCUg- -3'
miRNA:   3'- -CGCGUGg-GCggCUCGCuGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 151879 0.72 0.458744
Target:  5'- -gGCGCCCGgUGucCgGACGGCGCCGCa -3'
miRNA:   3'- cgCGUGGGCgGCucG-CUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 150634 0.68 0.651681
Target:  5'- -gGCGCCgGCgGuacuGCGGCGguuucguaccaggGCGCCACg -3'
miRNA:   3'- cgCGUGGgCGgCu---CGCUGC-------------UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 149914 0.7 0.57664
Target:  5'- -aGC-CCCGCCGuggguuuuaAGCGGCaGuACGCCGCc -3'
miRNA:   3'- cgCGuGGGCGGC---------UCGCUG-C-UGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 148573 0.68 0.652632
Target:  5'- cCGCuauguuuuucaACCCGUaucUGAGCGGCGGCGUgACc -3'
miRNA:   3'- cGCG-----------UGGGCG---GCUCGCUGCUGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 142510 0.7 0.530062
Target:  5'- gGCGUGCCCGgCGAGacggGAgGugGCUGCu -3'
miRNA:   3'- -CGCGUGGGCgGCUCg---CUgCugCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 142348 0.7 0.57664
Target:  5'- cGCGUGCUggaCGCCGAcgcccaGCGAUuaacgGACGCCGCc -3'
miRNA:   3'- -CGCGUGG---GCGGCU------CGCUG-----CUGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.