miRNA display CGI


Results 61 - 80 of 178 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1962 5' -61.7 NC_001347.2 + 140887 0.71 0.476119
Target:  5'- gGUGCGCCUcaagagcaGCCGcgacgaGGUGGCgGGCGCCACg -3'
miRNA:   3'- -CGCGUGGG--------CGGC------UCGCUG-CUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 139309 0.67 0.718463
Target:  5'- cGCGUGCCUaCCGAucugGCGGCGuuguGCGCgGCg -3'
miRNA:   3'- -CGCGUGGGcGGCU----CGCUGC----UGCGgUG- -5'
1962 5' -61.7 NC_001347.2 + 139242 0.74 0.340506
Target:  5'- cGUGCAUCgGCUGuGCGAgGACGCC-Cg -3'
miRNA:   3'- -CGCGUGGgCGGCuCGCUgCUGCGGuG- -5'
1962 5' -61.7 NC_001347.2 + 136198 0.69 0.595547
Target:  5'- cGCGgACUgCGCCGGGgGGCGGCgGgCACg -3'
miRNA:   3'- -CGCgUGG-GCGGCUCgCUGCUG-CgGUG- -5'
1962 5' -61.7 NC_001347.2 + 130030 0.66 0.754832
Target:  5'- -aGCGCCUgGCUacGCGACGACGUCuGCg -3'
miRNA:   3'- cgCGUGGG-CGGcuCGCUGCUGCGG-UG- -5'
1962 5' -61.7 NC_001347.2 + 129496 0.69 0.614546
Target:  5'- aGCGCGUCUGC--AGCG-CGGCGCCGCc -3'
miRNA:   3'- -CGCGUGGGCGgcUCGCuGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128860 0.71 0.511805
Target:  5'- cCGCGCCCGUCGcGC-ACGGCGCUu- -3'
miRNA:   3'- cGCGUGGGCGGCuCGcUGCUGCGGug -5'
1962 5' -61.7 NC_001347.2 + 128758 0.73 0.392867
Target:  5'- aGCGUGCCCGaacgugaccuuCCuAGCGACGGCgGCCAUg -3'
miRNA:   3'- -CGCGUGGGC-----------GGcUCGCUGCUG-CGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128665 0.68 0.643115
Target:  5'- aCGCGCCCguGCCGc-CGGCGACcGCCGu -3'
miRNA:   3'- cGCGUGGG--CGGCucGCUGCUG-CGGUg -5'
1962 5' -61.7 NC_001347.2 + 128439 0.7 0.524559
Target:  5'- -gGCGCCUGCugcguggccgucaagCGGcGCGACGGCGCgCGCa -3'
miRNA:   3'- cgCGUGGGCG---------------GCU-CGCUGCUGCG-GUG- -5'
1962 5' -61.7 NC_001347.2 + 128255 0.74 0.348391
Target:  5'- -gGUGCUCGCCuaucaccuguacgguGGCGACGGCGCCACu -3'
miRNA:   3'- cgCGUGGGCGGc--------------UCGCUGCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 128208 0.72 0.450184
Target:  5'- aCGCGCUCGCUuaacguGAcGCGuuauCGACGCCGCg -3'
miRNA:   3'- cGCGUGGGCGG------CU-CGCu---GCUGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 127576 0.7 0.520902
Target:  5'- aGCGUGCCCGUgGAcGCGGCcGGCGCg-- -3'
miRNA:   3'- -CGCGUGGGCGgCU-CGCUG-CUGCGgug -5'
1962 5' -61.7 NC_001347.2 + 126511 0.66 0.789701
Target:  5'- gGCGUACgCCGUCGcGCGcaacCGCCGCg -3'
miRNA:   3'- -CGCGUG-GGCGGCuCGCugcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 125835 0.68 0.652632
Target:  5'- aGCuGCAUCgUGCCGGcGCGACGAUGaCGCu -3'
miRNA:   3'- -CG-CGUGG-GCGGCU-CGCUGCUGCgGUG- -5'
1962 5' -61.7 NC_001347.2 + 118161 0.69 0.633591
Target:  5'- uGCGCACCCGguccaUGAGC-ACGuccucGCGCCAg -3'
miRNA:   3'- -CGCGUGGGCg----GCUCGcUGC-----UGCGGUg -5'
1962 5' -61.7 NC_001347.2 + 117850 0.68 0.652632
Target:  5'- -gGCGgCCGCUGAcGCGGCGAcCGCguCa -3'
miRNA:   3'- cgCGUgGGCGGCU-CGCUGCU-GCGguG- -5'
1962 5' -61.7 NC_001347.2 + 117320 0.66 0.79813
Target:  5'- cGCGUaauaguuguuACCCGC--GGCGACGGgGCCu- -3'
miRNA:   3'- -CGCG----------UGGGCGgcUCGCUGCUgCGGug -5'
1962 5' -61.7 NC_001347.2 + 116891 0.72 0.416853
Target:  5'- cGCGCGCCCcCCGGGCaACc-CGCCGCc -3'
miRNA:   3'- -CGCGUGGGcGGCUCGcUGcuGCGGUG- -5'
1962 5' -61.7 NC_001347.2 + 116644 0.66 0.79813
Target:  5'- uUGCuCuuGCUGAGCugcaugagcACGGCGCCGCc -3'
miRNA:   3'- cGCGuGggCGGCUCGc--------UGCUGCGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.