Results 61 - 80 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 100483 | 0.66 | 0.772484 |
Target: 5'- cGCGCGCCCGgCG-GUcACGGauCCGCa -3' miRNA: 3'- -CGCGUGGGCgGCuCGcUGCUgcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 209779 | 0.66 | 0.775964 |
Target: 5'- uGCGCuucGgCCGCCGGGUucuGucucggaacccacguGCGACGCCAa -3' miRNA: 3'- -CGCG---UgGGCGGCUCG---C---------------UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 96947 | 0.66 | 0.754832 |
Target: 5'- cUGCACgCCGCCGugacuGCGAuaauaaCGGCGCaGCa -3' miRNA: 3'- cGCGUG-GGCGGCu----CGCU------GCUGCGgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 200608 | 0.66 | 0.754832 |
Target: 5'- uUGCGCgCGUCGGGCuGCG-CGCCGu -3' miRNA: 3'- cGCGUGgGCGGCUCGcUGCuGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 209999 | 0.66 | 0.754832 |
Target: 5'- cCGCA-CCGCCGGGUcGCGGucCGCCGg -3' miRNA: 3'- cGCGUgGGCGGCUCGcUGCU--GCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 66161 | 0.66 | 0.754832 |
Target: 5'- -aGUACCUGaUCGAcCGACGGCGgCACu -3' miRNA: 3'- cgCGUGGGC-GGCUcGCUGCUGCgGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 130030 | 0.66 | 0.754832 |
Target: 5'- -aGCGCCUgGCUacGCGACGACGUCuGCg -3' miRNA: 3'- cgCGUGGG-CGGcuCGCUGCUGCGG-UG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 196567 | 0.66 | 0.754832 |
Target: 5'- uGUGCcaACCCGCgucGCGGCuACGCCAUg -3' miRNA: 3'- -CGCG--UGGGCGgcuCGCUGcUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 30576 | 0.66 | 0.753939 |
Target: 5'- cCGCACacagacgacgCGCCGGGCGgcuuccuGCGGCcgGCCGCg -3' miRNA: 3'- cGCGUGg---------GCGGCUCGC-------UGCUG--CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 115848 | 0.66 | 0.752151 |
Target: 5'- -aGCGCCaCGCCG-GCGuuuucgcgcgucucAUGAUGCCAg -3' miRNA: 3'- cgCGUGG-GCGGCuCGC--------------UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 108130 | 0.66 | 0.754832 |
Target: 5'- cGCGUuuggucGCCUGCCuauguaaGGCGGCGgccgcagagggcGCGCCGCu -3' miRNA: 3'- -CGCG------UGGGCGGc------UCGCUGC------------UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 208090 | 0.66 | 0.754832 |
Target: 5'- cCGCugCCGCagauGGGCgcaccGACGGCggaGCCGCg -3' miRNA: 3'- cGCGugGGCGg---CUCG-----CUGCUG---CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 6190 | 0.66 | 0.772484 |
Target: 5'- aGUGUaucgaGCUCGCCG-GCGGCGaaacaaccaGCGCCGg -3' miRNA: 3'- -CGCG-----UGGGCGGCuCGCUGC---------UGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 18351 | 0.66 | 0.772484 |
Target: 5'- aCGCugCgGCCGuGGCcaaGACGGC-CCGCg -3' miRNA: 3'- cGCGugGgCGGC-UCG---CUGCUGcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 158092 | 0.66 | 0.772484 |
Target: 5'- -aGCGCCgCGCUGcGCGGCGGCcUCAUc -3' miRNA: 3'- cgCGUGG-GCGGCuCGCUGCUGcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 105142 | 0.66 | 0.763709 |
Target: 5'- aCGCGCCaCGCUc-GCucUGACGCCGCg -3' miRNA: 3'- cGCGUGG-GCGGcuCGcuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 85964 | 0.66 | 0.763709 |
Target: 5'- cGCGCgaACCCGUguaGuGCGAgcCGcCGCCACc -3' miRNA: 3'- -CGCG--UGGGCGg--CuCGCU--GCuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 103119 | 0.66 | 0.763709 |
Target: 5'- aCGCACCUGCCGcguaacauggaaGGCGuacagguaGugGCCGa -3' miRNA: 3'- cGCGUGGGCGGC------------UCGCug------CugCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 39794 | 0.66 | 0.761056 |
Target: 5'- aGCGCACagCCGCCucccGGGCgcgcacccaucuagGugGACGCC-Cg -3' miRNA: 3'- -CGCGUG--GGCGG----CUCG--------------CugCUGCGGuG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193632 | 0.66 | 0.754832 |
Target: 5'- gGUGCAUCCcgaccaucggGCCGAGCugUGcCGCCGCu -3' miRNA: 3'- -CGCGUGGG----------CGGCUCGcuGCuGCGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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