Results 81 - 100 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 38113 | 0.67 | 0.743154 |
Target: 5'- aCGUGCCCGUCcAGCGggcaguacccgaacACGGCGCC-Ca -3' miRNA: 3'- cGCGUGGGCGGcUCGC--------------UGCUGCGGuG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193 | 0.67 | 0.745862 |
Target: 5'- gGUGUGCCgGCgGGGUGugGugGCgGg -3' miRNA: 3'- -CGCGUGGgCGgCUCGCugCugCGgUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 15547 | 0.67 | 0.736806 |
Target: 5'- gGUGUggaaGCa-GCCGAGCG-CGAgGCCGCu -3' miRNA: 3'- -CGCG----UGggCGGCUCGCuGCUgCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 190407 | 0.67 | 0.736806 |
Target: 5'- cGUGCAUCUGCCGAaacaccGUGugGugGUugUACg -3' miRNA: 3'- -CGCGUGGGCGGCU------CGCugCugCG--GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 158662 | 0.67 | 0.736806 |
Target: 5'- gGCGC-CCCGCUGuGUcGgGGCGCgCGCu -3' miRNA: 3'- -CGCGuGGGCGGCuCGcUgCUGCG-GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 78610 | 0.67 | 0.736806 |
Target: 5'- gGCGCGaggacuCCaugaGCCuGGGCGcgcGCGACGCCGa -3' miRNA: 3'- -CGCGU------GGg---CGG-CUCGC---UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 12803 | 0.67 | 0.736806 |
Target: 5'- gGCGUuuucACUaCGCCGuG-GACGACGCCGa -3' miRNA: 3'- -CGCG----UGG-GCGGCuCgCUGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 115848 | 0.66 | 0.752151 |
Target: 5'- -aGCGCCaCGCCG-GCGuuuucgcgcgucucAUGAUGCCAg -3' miRNA: 3'- cgCGUGG-GCGGCuCGC--------------UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 30576 | 0.66 | 0.753939 |
Target: 5'- cCGCACacagacgacgCGCCGGGCGgcuuccuGCGGCcgGCCGCg -3' miRNA: 3'- cGCGUGg---------GCGGCUCGC-------UGCUG--CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 196567 | 0.66 | 0.754832 |
Target: 5'- uGUGCcaACCCGCgucGCGGCuACGCCAUg -3' miRNA: 3'- -CGCG--UGGGCGgcuCGCUGcUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 103119 | 0.66 | 0.763709 |
Target: 5'- aCGCACCUGCCGcguaacauggaaGGCGuacagguaGugGCCGa -3' miRNA: 3'- cGCGUGGGCGGC------------UCGCug------CugCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 39794 | 0.66 | 0.761056 |
Target: 5'- aGCGCACagCCGCCucccGGGCgcgcacccaucuagGugGACGCC-Cg -3' miRNA: 3'- -CGCGUG--GGCGG----CUCG--------------CugCUGCGGuG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193632 | 0.66 | 0.754832 |
Target: 5'- gGUGCAUCCcgaccaucggGCCGAGCugUGcCGCCGCu -3' miRNA: 3'- -CGCGUGGG----------CGGCUCGcuGCuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 208090 | 0.66 | 0.754832 |
Target: 5'- cCGCugCCGCagauGGGCgcaccGACGGCggaGCCGCg -3' miRNA: 3'- cGCGugGGCGg---CUCG-----CUGCUG---CGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 108130 | 0.66 | 0.754832 |
Target: 5'- cGCGUuuggucGCCUGCCuauguaaGGCGGCGgccgcagagggcGCGCCGCu -3' miRNA: 3'- -CGCG------UGGGCGGc------UCGCUGC------------UGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 96947 | 0.66 | 0.754832 |
Target: 5'- cUGCACgCCGCCGugacuGCGAuaauaaCGGCGCaGCa -3' miRNA: 3'- cGCGUG-GGCGGCu----CGCU------GCUGCGgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 200608 | 0.66 | 0.754832 |
Target: 5'- uUGCGCgCGUCGGGCuGCG-CGCCGu -3' miRNA: 3'- cGCGUGgGCGGCUCGcUGCuGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 209999 | 0.66 | 0.754832 |
Target: 5'- cCGCA-CCGCCGGGUcGCGGucCGCCGg -3' miRNA: 3'- cGCGUgGGCGGCUCGcUGCU--GCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 66161 | 0.66 | 0.754832 |
Target: 5'- -aGUACCUGaUCGAcCGACGGCGgCACu -3' miRNA: 3'- cgCGUGGGC-GGCUcGCUGCUGCgGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 130030 | 0.66 | 0.754832 |
Target: 5'- -aGCGCCUgGCUacGCGACGACGUCuGCg -3' miRNA: 3'- cgCGUGGG-CGGcuCGCUGCUGCGG-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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