Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1962 | 5' | -61.7 | NC_001347.2 | + | 40370 | 0.66 | 0.793088 |
Target: 5'- cGCGCcccgacacacccaaaACaCCGCCG-GUG-CGGgGCCGCg -3' miRNA: 3'- -CGCG---------------UG-GGCGGCuCGCuGCUgCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 96291 | 0.66 | 0.79813 |
Target: 5'- -aGCcaUCGCCGAGUGcGCGGCGCaCAUg -3' miRNA: 3'- cgCGugGGCGGCUCGC-UGCUGCG-GUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 116644 | 0.66 | 0.79813 |
Target: 5'- uUGCuCuuGCUGAGCugcaugagcACGGCGCCGCc -3' miRNA: 3'- cGCGuGggCGGCUCGc--------UGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 28246 | 0.66 | 0.79813 |
Target: 5'- cGCGUACUgGCUGGaaCGuCGGCGCCGa -3' miRNA: 3'- -CGCGUGGgCGGCUc-GCuGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 153767 | 0.66 | 0.79813 |
Target: 5'- uCGCGCCagugCGCCGu----CGACGCCGCu -3' miRNA: 3'- cGCGUGG----GCGGCucgcuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193227 | 0.66 | 0.781151 |
Target: 5'- cGCGCgACuuGgCCGAccuguGCGuGCGACGCgACu -3' miRNA: 3'- -CGCG-UGggC-GGCU-----CGC-UGCUGCGgUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 188854 | 0.66 | 0.781151 |
Target: 5'- aCGUuCCUGCUG-GCGcCGGCGCUGCc -3' miRNA: 3'- cGCGuGGGCGGCuCGCuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 193632 | 0.66 | 0.754832 |
Target: 5'- gGUGCAUCCcgaccaucggGCCGAGCugUGcCGCCGCu -3' miRNA: 3'- -CGCGUGGG----------CGGCUCGcuGCuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 39794 | 0.66 | 0.761056 |
Target: 5'- aGCGCACagCCGCCucccGGGCgcgcacccaucuagGugGACGCC-Cg -3' miRNA: 3'- -CGCGUG--GGCGG----CUCG--------------CugCUGCGGuG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 103119 | 0.66 | 0.763709 |
Target: 5'- aCGCACCUGCCGcguaacauggaaGGCGuacagguaGugGCCGa -3' miRNA: 3'- cGCGUGGGCGGC------------UCGCug------CugCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 85964 | 0.66 | 0.763709 |
Target: 5'- cGCGCgaACCCGUguaGuGCGAgcCGcCGCCACc -3' miRNA: 3'- -CGCG--UGGGCGg--CuCGCU--GCuGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 105142 | 0.66 | 0.763709 |
Target: 5'- aCGCGCCaCGCUc-GCucUGACGCCGCg -3' miRNA: 3'- cGCGUGG-GCGGcuCGcuGCUGCGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 158092 | 0.66 | 0.772484 |
Target: 5'- -aGCGCCgCGCUGcGCGGCGGCcUCAUc -3' miRNA: 3'- cgCGUGG-GCGGCuCGCUGCUGcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 18351 | 0.66 | 0.772484 |
Target: 5'- aCGCugCgGCCGuGGCcaaGACGGC-CCGCg -3' miRNA: 3'- cGCGugGgCGGC-UCG---CUGCUGcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 6190 | 0.66 | 0.772484 |
Target: 5'- aGUGUaucgaGCUCGCCG-GCGGCGaaacaaccaGCGCCGg -3' miRNA: 3'- -CGCG-----UGGGCGGCuCGCUGC---------UGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 209779 | 0.66 | 0.775964 |
Target: 5'- uGCGCuucGgCCGCCGGGUucuGucucggaacccacguGCGACGCCAa -3' miRNA: 3'- -CGCG---UgGGCGGCUCG---C---------------UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 100483 | 0.66 | 0.772484 |
Target: 5'- cGCGCGCCCGgCG-GUcACGGauCCGCa -3' miRNA: 3'- -CGCGUGGGCgGCuCGcUGCUgcGGUG- -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 81721 | 0.66 | 0.781151 |
Target: 5'- aGCuuGCCgGCCGAGCccACGAUGUCGg -3' miRNA: 3'- -CGcgUGGgCGGCUCGc-UGCUGCGGUg -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 15592 | 0.66 | 0.781151 |
Target: 5'- aCGgGCCCGCgGcugcauugccuGGUGACGACGCg-- -3' miRNA: 3'- cGCgUGGGCGgC-----------UCGCUGCUGCGgug -5' |
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1962 | 5' | -61.7 | NC_001347.2 | + | 185136 | 0.66 | 0.781151 |
Target: 5'- -aGCAgCCGCCGGGCGGC-ACGg--- -3' miRNA: 3'- cgCGUgGGCGGCUCGCUGcUGCggug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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