miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 41572 0.66 0.94015
Target:  5'- cGGCGaaCUCGGCGACGgugCGGgcCAGUCc -3'
miRNA:   3'- -CCGUggGAGUUGUUGUa--GCUa-GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 46620 0.66 0.94015
Target:  5'- aGCACCUgcagCAGCAACAccaauaccggccUUGAUgcccaGGCCg -3'
miRNA:   3'- cCGUGGGa---GUUGUUGU------------AGCUAg----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 22133 0.66 0.94015
Target:  5'- cGCGgCCUCGGCGGCAcCGcuGUCaucaccGGCCu -3'
miRNA:   3'- cCGUgGGAGUUGUUGUaGC--UAG------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 28509 0.66 0.94015
Target:  5'- aGCACCCgcgUCAG-GAUcgCGGUCGGaCCa -3'
miRNA:   3'- cCGUGGG---AGUUgUUGuaGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 41685 0.66 0.94015
Target:  5'- gGGCGCgUUCGuuGACGUCGAUgGGg- -3'
miRNA:   3'- -CCGUGgGAGUugUUGUAGCUAgUCgg -5'
19623 3' -50.7 NC_004686.1 + 14405 0.66 0.93483
Target:  5'- aGCACCCcgagcCAACAACccagCGAUC-GUCa -3'
miRNA:   3'- cCGUGGGa----GUUGUUGua--GCUAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 55739 0.66 0.93483
Target:  5'- cGGCcauCgCCUCAuuCAACGUgGuguacUCAGCCa -3'
miRNA:   3'- -CCGu--G-GGAGUu-GUUGUAgCu----AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 45609 0.66 0.929218
Target:  5'- cGGCgACCUgcgCGGCGGCuuUCGucuucgCAGCCc -3'
miRNA:   3'- -CCG-UGGGa--GUUGUUGu-AGCua----GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 22749 0.66 0.929218
Target:  5'- cGGCGCCg-CGGCuaucGCGgucaccggUGGUCAGCCc -3'
miRNA:   3'- -CCGUGGgaGUUGu---UGUa-------GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 34008 0.66 0.929218
Target:  5'- uGGCGgCCUUGAUGcCGUCaAUCAGCa -3'
miRNA:   3'- -CCGUgGGAGUUGUuGUAGcUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 45433 0.66 0.929218
Target:  5'- uGGCauACCC-CAACAACcaaCGAcuUCaAGCCa -3'
miRNA:   3'- -CCG--UGGGaGUUGUUGua-GCU--AG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 52981 0.66 0.925712
Target:  5'- gGGCAgcaucucccagcugaUCCUgGACcGCAUCGA--AGCCa -3'
miRNA:   3'- -CCGU---------------GGGAgUUGuUGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8212 0.66 0.923316
Target:  5'- cGGagaACCCggccggcgUCAACGaguACAUCGAcgAGCCg -3'
miRNA:   3'- -CCg--UGGG--------AGUUGU---UGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 46730 0.66 0.917122
Target:  5'- gGGCACguucauacgCCUgAGCGGCGUCugcacCAGCCu -3'
miRNA:   3'- -CCGUG---------GGAgUUGUUGUAGcua--GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 34390 0.66 0.917122
Target:  5'- cGCACCCgCAAguGCGUCGc---GCCg -3'
miRNA:   3'- cCGUGGGaGUUguUGUAGCuaguCGG- -5'
19623 3' -50.7 NC_004686.1 + 29133 0.66 0.917122
Target:  5'- --gGCCCUCAACggUGaagaUGAUCGGCUu -3'
miRNA:   3'- ccgUGGGAGUUGuuGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 37610 0.66 0.917122
Target:  5'- cGCACCCgUAGCcuUAUCGAUCuuGCg -3'
miRNA:   3'- cCGUGGGaGUUGuuGUAGCUAGu-CGg -5'
19623 3' -50.7 NC_004686.1 + 6472 0.67 0.913267
Target:  5'- uGGCcgGCUCUCAGCGgugaguccuccgaggGCuuuGUCGAuuuccUCGGCCa -3'
miRNA:   3'- -CCG--UGGGAGUUGU---------------UG---UAGCU-----AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 38560 0.67 0.910638
Target:  5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3'
miRNA:   3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 44401 0.67 0.910638
Target:  5'- uGGCGCCCUucgcccCAGCcccauACAUgGAUcCGGCg -3'
miRNA:   3'- -CCGUGGGA------GUUGu----UGUAgCUA-GUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.