Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 3' | -50.7 | NC_004686.1 | + | 55603 | 0.7 | 0.771781 |
Target: 5'- aGCGCCUUCAACcGCAaaaUC--UCGGCCu -3' miRNA: 3'- cCGUGGGAGUUGuUGU---AGcuAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 32202 | 0.7 | 0.761351 |
Target: 5'- uGGCcuuGCCCUCAACAcagugaagGCAUa---CAGCCa -3' miRNA: 3'- -CCG---UGGGAGUUGU--------UGUAgcuaGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 15777 | 0.71 | 0.685129 |
Target: 5'- cGGCACaCgCUaCGACGACAUggUGAUCcGCCg -3' miRNA: 3'- -CCGUG-G-GA-GUUGUUGUA--GCUAGuCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 32516 | 0.71 | 0.695164 |
Target: 5'- gGGCGgauccguUCCUUAugGACGUgGggCAGCCa -3' miRNA: 3'- -CCGU-------GGGAGUugUUGUAgCuaGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 26709 | 0.71 | 0.685129 |
Target: 5'- cGCACCCUCGuugauGCugucGCcgUGAUCGGCg -3' miRNA: 3'- cCGUGGGAGU-----UGu---UGuaGCUAGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 52664 | 0.71 | 0.729274 |
Target: 5'- cGCgGCCCUgAACGcgGCGUUuGUCGGCCa -3' miRNA: 3'- cCG-UGGGAgUUGU--UGUAGcUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 23294 | 0.71 | 0.681774 |
Target: 5'- cGGCACCCaacUCAcccagaacaccgugACGACGUCGGgaacagugUCGGCa -3' miRNA: 3'- -CCGUGGG---AGU--------------UGUUGUAGCU--------AGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 48423 | 0.71 | 0.68513 |
Target: 5'- aGCGCCgcaucgagUUCAGCuaucGCGUCGGUCGGCa -3' miRNA: 3'- cCGUGG--------GAGUUGu---UGUAGCUAGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 16843 | 0.71 | 0.673929 |
Target: 5'- uGGCGCCgCUaCAACAccaccaguguuGCGUUGG-CGGCCg -3' miRNA: 3'- -CCGUGG-GA-GUUGU-----------UGUAGCUaGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 50849 | 0.72 | 0.628828 |
Target: 5'- aGCAgCCUCAACAGCca-GGUCGGgCg -3' miRNA: 3'- cCGUgGGAGUUGUUGuagCUAGUCgG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 23726 | 0.72 | 0.662688 |
Target: 5'- gGGCACaCCgUgAACAACAUCG-UC-GCCg -3' miRNA: 3'- -CCGUG-GG-AgUUGUUGUAGCuAGuCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 48203 | 0.73 | 0.583768 |
Target: 5'- aGGCacACCCUgCAGCAACA-CGAUUcguccggggaAGCCg -3' miRNA: 3'- -CCG--UGGGA-GUUGUUGUaGCUAG----------UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 11742 | 0.73 | 0.580409 |
Target: 5'- gGGCACCCUgccCAACGGCAUcaacguggagaacgCGggCAGCg -3' miRNA: 3'- -CCGUGGGA---GUUGUUGUA--------------GCuaGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 36660 | 0.73 | 0.583769 |
Target: 5'- cGGCGgCgUCGGCGGCGUCGuAUCAaCCg -3' miRNA: 3'- -CCGUgGgAGUUGUUGUAGC-UAGUcGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 36327 | 0.74 | 0.51761 |
Target: 5'- cGGCcauGCCCUgAGCGACGaucuggUCGAUCugcGCCg -3' miRNA: 3'- -CCG---UGGGAgUUGUUGU------AGCUAGu--CGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 29305 | 0.75 | 0.485641 |
Target: 5'- aGGCAuuCCCUCAuGCAgaACAUCaccAUCGGCCg -3' miRNA: 3'- -CCGU--GGGAGU-UGU--UGUAGc--UAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 928 | 0.75 | 0.454643 |
Target: 5'- aGGCGCCUUCGAaacccuCGUCGuAUUGGCCg -3' miRNA: 3'- -CCGUGGGAGUUguu---GUAGC-UAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 7213 | 0.75 | 0.475193 |
Target: 5'- cGCGCgCUCuACAACGUCGcccucgcguUCAGCCa -3' miRNA: 3'- cCGUGgGAGuUGUUGUAGCu--------AGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 4490 | 0.76 | 0.434583 |
Target: 5'- aGGCugCCaagcUCGACGAgAUCGAgcaGGCCa -3' miRNA: 3'- -CCGugGG----AGUUGUUgUAGCUag-UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 52943 | 0.8 | 0.272484 |
Target: 5'- cGCGCCUUCAGCcuCAgCGAUCAGCUc -3' miRNA: 3'- cCGUGGGAGUUGuuGUaGCUAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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