Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 3' | -50.7 | NC_004686.1 | + | 48549 | 0.68 | 0.839878 |
Target: 5'- cGCGCCCcuuUCAG--GCGUUGAUUGGCUg -3' miRNA: 3'- cCGUGGG---AGUUguUGUAGCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 55221 | 0.68 | 0.848769 |
Target: 5'- cGGCGCCgUCAACAuCGUCuc-CcGCCa -3' miRNA: 3'- -CCGUGGgAGUUGUuGUAGcuaGuCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 22027 | 0.68 | 0.865826 |
Target: 5'- cGGCGCCgaCGGCGgcGCGUCGAcauUCA-CCu -3' miRNA: 3'- -CCGUGGgaGUUGU--UGUAGCU---AGUcGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 22393 | 0.68 | 0.865826 |
Target: 5'- cGGCACCgauggCUaCAACcGCAUCGAcUGGCUg -3' miRNA: 3'- -CCGUGG-----GA-GUUGuUGUAGCUaGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 13473 | 0.68 | 0.865826 |
Target: 5'- cGGCACCaacauUCAACAAC-UCac-CGGCCu -3' miRNA: 3'- -CCGUGGg----AGUUGUUGuAGcuaGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 16947 | 0.68 | 0.865826 |
Target: 5'- uGGCGgUC-CAACc-CAUgCGGUCAGCCa -3' miRNA: 3'- -CCGUgGGaGUUGuuGUA-GCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 5672 | 0.68 | 0.873974 |
Target: 5'- aGGCGUCUaUGAgGACAUCGAacgcagcaUCAGCCa -3' miRNA: 3'- -CCGUGGGaGUUgUUGUAGCU--------AGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 35311 | 0.68 | 0.873974 |
Target: 5'- uGUAuuCCUUCGuCGGCAUCGAauccggaagaaUCAGCCu -3' miRNA: 3'- cCGU--GGGAGUuGUUGUAGCU-----------AGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 12140 | 0.68 | 0.873974 |
Target: 5'- gGGCAgUUUCGGCGcCggCGGUCAGgCCg -3' miRNA: 3'- -CCGUgGGAGUUGUuGuaGCUAGUC-GG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 50386 | 0.67 | 0.889472 |
Target: 5'- gGGUAcgacCCCUgAgcguGCAGCGUUGAUCgagagAGCCg -3' miRNA: 3'- -CCGU----GGGAgU----UGUUGUAGCUAG-----UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 5291 | 0.67 | 0.889472 |
Target: 5'- cGGCgaagAUCCUCGACAccaccaACAUCG-UCgAGCUg -3' miRNA: 3'- -CCG----UGGGAGUUGU------UGUAGCuAG-UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 30852 | 0.67 | 0.908637 |
Target: 5'- cGGCAucaucgccgcuCCCggaucucguucuguUCAuCAGCGcaggCGAUCAGCCa -3' miRNA: 3'- -CCGU-----------GGG--------------AGUuGUUGUa---GCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 8318 | 0.67 | 0.909307 |
Target: 5'- gGGCagGCCCUCAGgcccagccaaaaAACAUCGAacaagaaggUCcAGCCa -3' miRNA: 3'- -CCG--UGGGAGUUg-----------UUGUAGCU---------AG-UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 56032 | 0.67 | 0.881858 |
Target: 5'- cGGCACCCgccaaccCGGCcGCGUCGccuggcgguUCGGCa -3' miRNA: 3'- -CCGUGGGa------GUUGuUGUAGCu--------AGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 44104 | 0.67 | 0.89681 |
Target: 5'- cGGUAgCCgCAGCAGaagccgccugGUCGAUCAGaCCg -3' miRNA: 3'- -CCGUgGGaGUUGUUg---------UAGCUAGUC-GG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 38560 | 0.67 | 0.910638 |
Target: 5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3' miRNA: 3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 3504 | 0.67 | 0.881858 |
Target: 5'- -aCACCC-CAGCAggcGCGUCGggCcauGGCCg -3' miRNA: 3'- ccGUGGGaGUUGU---UGUAGCuaG---UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 55748 | 0.67 | 0.881858 |
Target: 5'- cGCACCC---ACAccCAUCG-UCAGCCu -3' miRNA: 3'- cCGUGGGaguUGUu-GUAGCuAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 14835 | 0.67 | 0.889472 |
Target: 5'- cGGuCACCUccgCAGCAGCAgCGAgaagagCAGCg -3' miRNA: 3'- -CC-GUGGGa--GUUGUUGUaGCUa-----GUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 35070 | 0.67 | 0.881858 |
Target: 5'- uGGCGUCUggUCGcUGAUGUUGAUCAGCCg -3' miRNA: 3'- -CCGUGGG--AGUuGUUGUAGCUAGUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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