miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 14473 1.14 0.001472
Target:  5'- gGGCACCCUCAACAACAUCGAUCAGCCc -3'
miRNA:   3'- -CCGUGGGAGUUGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5830 0.81 0.232473
Target:  5'- cGUACCCUCGuuACu-CAUCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGU--UGuuGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 14216 0.8 0.24523
Target:  5'- cGGCACCUUCAGCccaGUCGAUCcacaaggugcGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUGuugUAGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 52943 0.8 0.272484
Target:  5'- cGCGCCUUCAGCcuCAgCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGUUGuuGUaGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 4490 0.76 0.434583
Target:  5'- aGGCugCCaagcUCGACGAgAUCGAgcaGGCCa -3'
miRNA:   3'- -CCGugGG----AGUUGUUgUAGCUag-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 928 0.75 0.454643
Target:  5'- aGGCGCCUUCGAaacccuCGUCGuAUUGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUguu---GUAGC-UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 7213 0.75 0.475193
Target:  5'- cGCGCgCUCuACAACGUCGcccucgcguUCAGCCa -3'
miRNA:   3'- cCGUGgGAGuUGUUGUAGCu--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29305 0.75 0.485641
Target:  5'- aGGCAuuCCCUCAuGCAgaACAUCaccAUCGGCCg -3'
miRNA:   3'- -CCGU--GGGAGU-UGU--UGUAGc--UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 36327 0.74 0.51761
Target:  5'- cGGCcauGCCCUgAGCGACGaucuggUCGAUCugcGCCg -3'
miRNA:   3'- -CCG---UGGGAgUUGUUGU------AGCUAGu--CGG- -5'
19623 3' -50.7 NC_004686.1 + 11742 0.73 0.580409
Target:  5'- gGGCACCCUgccCAACGGCAUcaacguggagaacgCGggCAGCg -3'
miRNA:   3'- -CCGUGGGA---GUUGUUGUA--------------GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 48203 0.73 0.583768
Target:  5'- aGGCacACCCUgCAGCAACA-CGAUUcguccggggaAGCCg -3'
miRNA:   3'- -CCG--UGGGA-GUUGUUGUaGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 36660 0.73 0.583769
Target:  5'- cGGCGgCgUCGGCGGCGUCGuAUCAaCCg -3'
miRNA:   3'- -CCGUgGgAGUUGUUGUAGC-UAGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 50849 0.72 0.628828
Target:  5'- aGCAgCCUCAACAGCca-GGUCGGgCg -3'
miRNA:   3'- cCGUgGGAGUUGUUGuagCUAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 23726 0.72 0.662688
Target:  5'- gGGCACaCCgUgAACAACAUCG-UC-GCCg -3'
miRNA:   3'- -CCGUG-GG-AgUUGUUGUAGCuAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 16843 0.71 0.673929
Target:  5'- uGGCGCCgCUaCAACAccaccaguguuGCGUUGG-CGGCCg -3'
miRNA:   3'- -CCGUGG-GA-GUUGU-----------UGUAGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 23294 0.71 0.681774
Target:  5'- cGGCACCCaacUCAcccagaacaccgugACGACGUCGGgaacagugUCGGCa -3'
miRNA:   3'- -CCGUGGG---AGU--------------UGUUGUAGCU--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 15777 0.71 0.685129
Target:  5'- cGGCACaCgCUaCGACGACAUggUGAUCcGCCg -3'
miRNA:   3'- -CCGUG-G-GA-GUUGUUGUA--GCUAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 26709 0.71 0.685129
Target:  5'- cGCACCCUCGuugauGCugucGCcgUGAUCGGCg -3'
miRNA:   3'- cCGUGGGAGU-----UGu---UGuaGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 48423 0.71 0.68513
Target:  5'- aGCGCCgcaucgagUUCAGCuaucGCGUCGGUCGGCa -3'
miRNA:   3'- cCGUGG--------GAGUUGu---UGUAGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 32516 0.71 0.695164
Target:  5'- gGGCGgauccguUCCUUAugGACGUgGggCAGCCa -3'
miRNA:   3'- -CCGU-------GGGAGUugUUGUAgCuaGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.