miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 52664 0.71 0.729274
Target:  5'- cGCgGCCCUgAACGcgGCGUUuGUCGGCCa -3'
miRNA:   3'- cCG-UGGGAgUUGU--UGUAGcUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 25523 0.7 0.744378
Target:  5'- gGGCAgCCCagaUCAACAacccccgcaggGCAUCugcuugguacagccaGAUCGGCCa -3'
miRNA:   3'- -CCGU-GGG---AGUUGU-----------UGUAG---------------CUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8526 0.7 0.750782
Target:  5'- cGCACCgUCAACG-CAUUcaccuUCGGCCg -3'
miRNA:   3'- cCGUGGgAGUUGUuGUAGcu---AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 32202 0.7 0.761351
Target:  5'- uGGCcuuGCCCUCAACAcagugaagGCAUa---CAGCCa -3'
miRNA:   3'- -CCG---UGGGAGUUGU--------UGUAgcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55603 0.7 0.771781
Target:  5'- aGCGCCUUCAACcGCAaaaUC--UCGGCCu -3'
miRNA:   3'- cCGUGGGAGUUGuUGU---AGcuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 31023 0.7 0.786125
Target:  5'- cGGCAgCCUCGACGGCgguuuugaugaugggGUCGA--AGUCg -3'
miRNA:   3'- -CCGUgGGAGUUGUUG---------------UAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 20087 0.69 0.792173
Target:  5'- uGGC-CCgCUCAACAACAUCacUCAuGCg -3'
miRNA:   3'- -CCGuGG-GAGUUGUUGUAGcuAGU-CGg -5'
19623 3' -50.7 NC_004686.1 + 45682 0.69 0.802111
Target:  5'- cGCugCCUCAGCAAgGUUG-UCGGaCa -3'
miRNA:   3'- cCGugGGAGUUGUUgUAGCuAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 3559 0.69 0.811862
Target:  5'- cGCAgCCUCAACAAUGcUCGGguuUCcGCCu -3'
miRNA:   3'- cCGUgGGAGUUGUUGU-AGCU---AGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 23494 0.69 0.811862
Target:  5'- cGGCAUCUgggUCGGCAGCAUCGaAUUGGg- -3'
miRNA:   3'- -CCGUGGG---AGUUGUUGUAGC-UAGUCgg -5'
19623 3' -50.7 NC_004686.1 + 26892 0.69 0.811862
Target:  5'- -aUACCCUCGACGACAgUGAccuguucaccUCGGCg -3'
miRNA:   3'- ccGUGGGAGUUGUUGUaGCU----------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 55512 0.69 0.830755
Target:  5'- aGGUACgCgau-CGGCAUCG-UCGGCCa -3'
miRNA:   3'- -CCGUGgGaguuGUUGUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55607 0.69 0.830755
Target:  5'- cGGCACCCUCGGguGCGagGG-CAaCCa -3'
miRNA:   3'- -CCGUGGGAGUUguUGUagCUaGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 24604 0.68 0.838976
Target:  5'- aGGCACCUgaUCGACAcgucccGCGUcaCGGUCAggaggcuGCCg -3'
miRNA:   3'- -CCGUGGG--AGUUGU------UGUA--GCUAGU-------CGG- -5'
19623 3' -50.7 NC_004686.1 + 21188 0.68 0.838976
Target:  5'- uGGCACUggUUCAGC-GCAgacguuuguggugUCGGUCAGCa -3'
miRNA:   3'- -CCGUGG--GAGUUGuUGU-------------AGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 48549 0.68 0.839878
Target:  5'- cGCGCCCcuuUCAG--GCGUUGAUUGGCUg -3'
miRNA:   3'- cCGUGGG---AGUUguUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 24990 0.68 0.839878
Target:  5'- cGCGCCC---GCAGCGaCGA-CGGCCg -3'
miRNA:   3'- cCGUGGGaguUGUUGUaGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 23925 0.68 0.848769
Target:  5'- gGGagccaACCCUUGACGcggccgacaagGCAUCGGgcucggggagUCGGCCg -3'
miRNA:   3'- -CCg----UGGGAGUUGU-----------UGUAGCU----------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55221 0.68 0.848769
Target:  5'- cGGCGCCgUCAACAuCGUCuc-CcGCCa -3'
miRNA:   3'- -CCGUGGgAGUUGUuGUAGcuaGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 10213 0.68 0.848769
Target:  5'- cGGUACCCUCAccaccgcccuggACAACcugaauaacUgGGUCAGCg -3'
miRNA:   3'- -CCGUGGGAGU------------UGUUGu--------AgCUAGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.