Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 3' | -50.7 | NC_004686.1 | + | 30951 | 0.67 | 0.903866 |
Target: 5'- cGGCcaguGCUUUCGcaGCAGCGgcggCGAUCAGUg -3' miRNA: 3'- -CCG----UGGGAGU--UGUUGUa---GCUAGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 30852 | 0.67 | 0.908637 |
Target: 5'- cGGCAucaucgccgcuCCCggaucucguucuguUCAuCAGCGcaggCGAUCAGCCa -3' miRNA: 3'- -CCGU-----------GGG--------------AGUuGUUGUa---GCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 8318 | 0.67 | 0.909307 |
Target: 5'- gGGCagGCCCUCAGgcccagccaaaaAACAUCGAacaagaaggUCcAGCCa -3' miRNA: 3'- -CCG--UGGGAGUUg-----------UUGUAGCU---------AG-UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 44401 | 0.67 | 0.910638 |
Target: 5'- uGGCGCCCUucgcccCAGCcccauACAUgGAUcCGGCg -3' miRNA: 3'- -CCGUGGGA------GUUGu----UGUAgCUA-GUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 38560 | 0.67 | 0.910638 |
Target: 5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3' miRNA: 3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 6472 | 0.67 | 0.913267 |
Target: 5'- uGGCcgGCUCUCAGCGgugaguccuccgaggGCuuuGUCGAuuuccUCGGCCa -3' miRNA: 3'- -CCG--UGGGAGUUGU---------------UG---UAGCU-----AGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 37610 | 0.66 | 0.917122 |
Target: 5'- cGCACCCgUAGCcuUAUCGAUCuuGCg -3' miRNA: 3'- cCGUGGGaGUUGuuGUAGCUAGu-CGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 29133 | 0.66 | 0.917122 |
Target: 5'- --gGCCCUCAACggUGaagaUGAUCGGCUu -3' miRNA: 3'- ccgUGGGAGUUGuuGUa---GCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 46730 | 0.66 | 0.917122 |
Target: 5'- gGGCACguucauacgCCUgAGCGGCGUCugcacCAGCCu -3' miRNA: 3'- -CCGUG---------GGAgUUGUUGUAGcua--GUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 34390 | 0.66 | 0.917122 |
Target: 5'- cGCACCCgCAAguGCGUCGc---GCCg -3' miRNA: 3'- cCGUGGGaGUUguUGUAGCuaguCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 8212 | 0.66 | 0.923316 |
Target: 5'- cGGagaACCCggccggcgUCAACGaguACAUCGAcgAGCCg -3' miRNA: 3'- -CCg--UGGG--------AGUUGU---UGUAGCUagUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 52981 | 0.66 | 0.925712 |
Target: 5'- gGGCAgcaucucccagcugaUCCUgGACcGCAUCGA--AGCCa -3' miRNA: 3'- -CCGU---------------GGGAgUUGuUGUAGCUagUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 45609 | 0.66 | 0.929218 |
Target: 5'- cGGCgACCUgcgCGGCGGCuuUCGucuucgCAGCCc -3' miRNA: 3'- -CCG-UGGGa--GUUGUUGu-AGCua----GUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 45433 | 0.66 | 0.929218 |
Target: 5'- uGGCauACCC-CAACAACcaaCGAcuUCaAGCCa -3' miRNA: 3'- -CCG--UGGGaGUUGUUGua-GCU--AG-UCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 34008 | 0.66 | 0.929218 |
Target: 5'- uGGCGgCCUUGAUGcCGUCaAUCAGCa -3' miRNA: 3'- -CCGUgGGAGUUGUuGUAGcUAGUCGg -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 22749 | 0.66 | 0.929218 |
Target: 5'- cGGCGCCg-CGGCuaucGCGgucaccggUGGUCAGCCc -3' miRNA: 3'- -CCGUGGgaGUUGu---UGUa-------GCUAGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 14405 | 0.66 | 0.93483 |
Target: 5'- aGCACCCcgagcCAACAACccagCGAUC-GUCa -3' miRNA: 3'- cCGUGGGa----GUUGUUGua--GCUAGuCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 55739 | 0.66 | 0.93483 |
Target: 5'- cGGCcauCgCCUCAuuCAACGUgGuguacUCAGCCa -3' miRNA: 3'- -CCGu--G-GGAGUu-GUUGUAgCu----AGUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 41572 | 0.66 | 0.94015 |
Target: 5'- cGGCGaaCUCGGCGACGgugCGGgcCAGUCc -3' miRNA: 3'- -CCGUggGAGUUGUUGUa--GCUa-GUCGG- -5' |
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19623 | 3' | -50.7 | NC_004686.1 | + | 41685 | 0.66 | 0.94015 |
Target: 5'- gGGCGCgUUCGuuGACGUCGAUgGGg- -3' miRNA: 3'- -CCGUGgGAGUugUUGUAGCUAgUCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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