miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 28509 0.66 0.94015
Target:  5'- aGCACCCgcgUCAG-GAUcgCGGUCGGaCCa -3'
miRNA:   3'- cCGUGGG---AGUUgUUGuaGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 29133 0.66 0.917122
Target:  5'- --gGCCCUCAACggUGaagaUGAUCGGCUu -3'
miRNA:   3'- ccgUGGGAGUUGuuGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29305 0.75 0.485641
Target:  5'- aGGCAuuCCCUCAuGCAgaACAUCaccAUCGGCCg -3'
miRNA:   3'- -CCGU--GGGAGU-UGU--UGUAGc--UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29574 0.67 0.903866
Target:  5'- aGGCAgCgUCGGCccgggcuGCGguUCGAUCGGCg -3'
miRNA:   3'- -CCGUgGgAGUUGu------UGU--AGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 30852 0.67 0.908637
Target:  5'- cGGCAucaucgccgcuCCCggaucucguucuguUCAuCAGCGcaggCGAUCAGCCa -3'
miRNA:   3'- -CCGU-----------GGG--------------AGUuGUUGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 30951 0.67 0.903866
Target:  5'- cGGCcaguGCUUUCGcaGCAGCGgcggCGAUCAGUg -3'
miRNA:   3'- -CCG----UGGGAGU--UGUUGUa---GCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 31023 0.7 0.786125
Target:  5'- cGGCAgCCUCGACGGCgguuuugaugaugggGUCGA--AGUCg -3'
miRNA:   3'- -CCGUgGGAGUUGUUG---------------UAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 32202 0.7 0.761351
Target:  5'- uGGCcuuGCCCUCAACAcagugaagGCAUa---CAGCCa -3'
miRNA:   3'- -CCG---UGGGAGUUGU--------UGUAgcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 32516 0.71 0.695164
Target:  5'- gGGCGgauccguUCCUUAugGACGUgGggCAGCCa -3'
miRNA:   3'- -CCGU-------GGGAGUugUUGUAgCuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 34008 0.66 0.929218
Target:  5'- uGGCGgCCUUGAUGcCGUCaAUCAGCa -3'
miRNA:   3'- -CCGUgGGAGUUGUuGUAGcUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 34390 0.66 0.917122
Target:  5'- cGCACCCgCAAguGCGUCGc---GCCg -3'
miRNA:   3'- cCGUGGGaGUUguUGUAGCuaguCGG- -5'
19623 3' -50.7 NC_004686.1 + 35070 0.67 0.881858
Target:  5'- uGGCGUCUggUCGcUGAUGUUGAUCAGCCg -3'
miRNA:   3'- -CCGUGGG--AGUuGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 35311 0.68 0.873974
Target:  5'- uGUAuuCCUUCGuCGGCAUCGAauccggaagaaUCAGCCu -3'
miRNA:   3'- cCGU--GGGAGUuGUUGUAGCU-----------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 36327 0.74 0.51761
Target:  5'- cGGCcauGCCCUgAGCGACGaucuggUCGAUCugcGCCg -3'
miRNA:   3'- -CCG---UGGGAgUUGUUGU------AGCUAGu--CGG- -5'
19623 3' -50.7 NC_004686.1 + 36660 0.73 0.583769
Target:  5'- cGGCGgCgUCGGCGGCGUCGuAUCAaCCg -3'
miRNA:   3'- -CCGUgGgAGUUGUUGUAGC-UAGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 37610 0.66 0.917122
Target:  5'- cGCACCCgUAGCcuUAUCGAUCuuGCg -3'
miRNA:   3'- cCGUGGGaGUUGuuGUAGCUAGu-CGg -5'
19623 3' -50.7 NC_004686.1 + 38560 0.67 0.910638
Target:  5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3'
miRNA:   3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 38875 0.67 0.903866
Target:  5'- cGCAUCCUCGACggUGUUccaaAUCuGGCCa -3'
miRNA:   3'- cCGUGGGAGUUGuuGUAGc---UAG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 41572 0.66 0.94015
Target:  5'- cGGCGaaCUCGGCGACGgugCGGgcCAGUCc -3'
miRNA:   3'- -CCGUggGAGUUGUUGUa--GCUa-GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 41685 0.66 0.94015
Target:  5'- gGGCGCgUUCGuuGACGUCGAUgGGg- -3'
miRNA:   3'- -CCGUGgGAGUugUUGUAGCUAgUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.