miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 44104 0.67 0.89681
Target:  5'- cGGUAgCCgCAGCAGaagccgccugGUCGAUCAGaCCg -3'
miRNA:   3'- -CCGUgGGaGUUGUUg---------UAGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 44401 0.67 0.910638
Target:  5'- uGGCGCCCUucgcccCAGCcccauACAUgGAUcCGGCg -3'
miRNA:   3'- -CCGUGGGA------GUUGu----UGUAgCUA-GUCGg -5'
19623 3' -50.7 NC_004686.1 + 45433 0.66 0.929218
Target:  5'- uGGCauACCC-CAACAACcaaCGAcuUCaAGCCa -3'
miRNA:   3'- -CCG--UGGGaGUUGUUGua-GCU--AG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 45609 0.66 0.929218
Target:  5'- cGGCgACCUgcgCGGCGGCuuUCGucuucgCAGCCc -3'
miRNA:   3'- -CCG-UGGGa--GUUGUUGu-AGCua----GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 45682 0.69 0.802111
Target:  5'- cGCugCCUCAGCAAgGUUG-UCGGaCa -3'
miRNA:   3'- cCGugGGAGUUGUUgUAGCuAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 46620 0.66 0.94015
Target:  5'- aGCACCUgcagCAGCAACAccaauaccggccUUGAUgcccaGGCCg -3'
miRNA:   3'- cCGUGGGa---GUUGUUGU------------AGCUAg----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 46730 0.66 0.917122
Target:  5'- gGGCACguucauacgCCUgAGCGGCGUCugcacCAGCCu -3'
miRNA:   3'- -CCGUG---------GGAgUUGUUGUAGcua--GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 48203 0.73 0.583768
Target:  5'- aGGCacACCCUgCAGCAACA-CGAUUcguccggggaAGCCg -3'
miRNA:   3'- -CCG--UGGGA-GUUGUUGUaGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 48423 0.71 0.68513
Target:  5'- aGCGCCgcaucgagUUCAGCuaucGCGUCGGUCGGCa -3'
miRNA:   3'- cCGUGG--------GAGUUGu---UGUAGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 48549 0.68 0.839878
Target:  5'- cGCGCCCcuuUCAG--GCGUUGAUUGGCUg -3'
miRNA:   3'- cCGUGGG---AGUUguUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 50386 0.67 0.889472
Target:  5'- gGGUAcgacCCCUgAgcguGCAGCGUUGAUCgagagAGCCg -3'
miRNA:   3'- -CCGU----GGGAgU----UGUUGUAGCUAG-----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 50849 0.72 0.628828
Target:  5'- aGCAgCCUCAACAGCca-GGUCGGgCg -3'
miRNA:   3'- cCGUgGGAGUUGUUGuagCUAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 51700 0.67 0.89681
Target:  5'- uGGCcUgCUCGAUcuCGUCGAgcuuggCAGCCu -3'
miRNA:   3'- -CCGuGgGAGUUGuuGUAGCUa-----GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 52664 0.71 0.729274
Target:  5'- cGCgGCCCUgAACGcgGCGUUuGUCGGCCa -3'
miRNA:   3'- cCG-UGGGAgUUGU--UGUAGcUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 52943 0.8 0.272484
Target:  5'- cGCGCCUUCAGCcuCAgCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGUUGuuGUaGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 52981 0.66 0.925712
Target:  5'- gGGCAgcaucucccagcugaUCCUgGACcGCAUCGA--AGCCa -3'
miRNA:   3'- -CCGU---------------GGGAgUUGuUGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55221 0.68 0.848769
Target:  5'- cGGCGCCgUCAACAuCGUCuc-CcGCCa -3'
miRNA:   3'- -CCGUGGgAGUUGUuGUAGcuaGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 55512 0.69 0.830755
Target:  5'- aGGUACgCgau-CGGCAUCG-UCGGCCa -3'
miRNA:   3'- -CCGUGgGaguuGUUGUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55603 0.7 0.771781
Target:  5'- aGCGCCUUCAACcGCAaaaUC--UCGGCCu -3'
miRNA:   3'- cCGUGGGAGUUGuUGU---AGcuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55607 0.69 0.830755
Target:  5'- cGGCACCCUCGGguGCGagGG-CAaCCa -3'
miRNA:   3'- -CCGUGGGAGUUguUGUagCUaGUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.