miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 29305 0.75 0.485641
Target:  5'- aGGCAuuCCCUCAuGCAgaACAUCaccAUCGGCCg -3'
miRNA:   3'- -CCGU--GGGAGU-UGU--UGUAGc--UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29133 0.66 0.917122
Target:  5'- --gGCCCUCAACggUGaagaUGAUCGGCUu -3'
miRNA:   3'- ccgUGGGAGUUGuuGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 28509 0.66 0.94015
Target:  5'- aGCACCCgcgUCAG-GAUcgCGGUCGGaCCa -3'
miRNA:   3'- cCGUGGG---AGUUgUUGuaGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 26892 0.69 0.811862
Target:  5'- -aUACCCUCGACGACAgUGAccuguucaccUCGGCg -3'
miRNA:   3'- ccGUGGGAGUUGUUGUaGCU----------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 26709 0.71 0.685129
Target:  5'- cGCACCCUCGuugauGCugucGCcgUGAUCGGCg -3'
miRNA:   3'- cCGUGGGAGU-----UGu---UGuaGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 25523 0.7 0.744378
Target:  5'- gGGCAgCCCagaUCAACAacccccgcaggGCAUCugcuugguacagccaGAUCGGCCa -3'
miRNA:   3'- -CCGU-GGG---AGUUGU-----------UGUAG---------------CUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 24990 0.68 0.839878
Target:  5'- cGCGCCC---GCAGCGaCGA-CGGCCg -3'
miRNA:   3'- cCGUGGGaguUGUUGUaGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 24604 0.68 0.838976
Target:  5'- aGGCACCUgaUCGACAcgucccGCGUcaCGGUCAggaggcuGCCg -3'
miRNA:   3'- -CCGUGGG--AGUUGU------UGUA--GCUAGU-------CGG- -5'
19623 3' -50.7 NC_004686.1 + 23925 0.68 0.848769
Target:  5'- gGGagccaACCCUUGACGcggccgacaagGCAUCGGgcucggggagUCGGCCg -3'
miRNA:   3'- -CCg----UGGGAGUUGU-----------UGUAGCU----------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 23726 0.72 0.662688
Target:  5'- gGGCACaCCgUgAACAACAUCG-UC-GCCg -3'
miRNA:   3'- -CCGUG-GG-AgUUGUUGUAGCuAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 23494 0.69 0.811862
Target:  5'- cGGCAUCUgggUCGGCAGCAUCGaAUUGGg- -3'
miRNA:   3'- -CCGUGGG---AGUUGUUGUAGC-UAGUCgg -5'
19623 3' -50.7 NC_004686.1 + 23294 0.71 0.681774
Target:  5'- cGGCACCCaacUCAcccagaacaccgugACGACGUCGGgaacagugUCGGCa -3'
miRNA:   3'- -CCGUGGG---AGU--------------UGUUGUAGCU--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 22749 0.66 0.929218
Target:  5'- cGGCGCCg-CGGCuaucGCGgucaccggUGGUCAGCCc -3'
miRNA:   3'- -CCGUGGgaGUUGu---UGUa-------GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 22393 0.68 0.865826
Target:  5'- cGGCACCgauggCUaCAACcGCAUCGAcUGGCUg -3'
miRNA:   3'- -CCGUGG-----GA-GUUGuUGUAGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 22133 0.66 0.94015
Target:  5'- cGCGgCCUCGGCGGCAcCGcuGUCaucaccGGCCu -3'
miRNA:   3'- cCGUgGGAGUUGUUGUaGC--UAG------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 22027 0.68 0.865826
Target:  5'- cGGCGCCgaCGGCGgcGCGUCGAcauUCA-CCu -3'
miRNA:   3'- -CCGUGGgaGUUGU--UGUAGCU---AGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 21826 0.68 0.848769
Target:  5'- gGGUGCgCCUCGGCGGCGcgggcgCGggCGGCg -3'
miRNA:   3'- -CCGUG-GGAGUUGUUGUa-----GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 21188 0.68 0.838976
Target:  5'- uGGCACUggUUCAGC-GCAgacguuuguggugUCGGUCAGCa -3'
miRNA:   3'- -CCGUGG--GAGUUGuUGU-------------AGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 20087 0.69 0.792173
Target:  5'- uGGC-CCgCUCAACAACAUCacUCAuGCg -3'
miRNA:   3'- -CCGuGG-GAGUUGUUGUAGcuAGU-CGg -5'
19623 3' -50.7 NC_004686.1 + 16947 0.68 0.865826
Target:  5'- uGGCGgUC-CAACc-CAUgCGGUCAGCCa -3'
miRNA:   3'- -CCGUgGGaGUUGuuGUA-GCUAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.