miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 16843 0.71 0.673929
Target:  5'- uGGCGCCgCUaCAACAccaccaguguuGCGUUGG-CGGCCg -3'
miRNA:   3'- -CCGUGG-GA-GUUGU-----------UGUAGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 15777 0.71 0.685129
Target:  5'- cGGCACaCgCUaCGACGACAUggUGAUCcGCCg -3'
miRNA:   3'- -CCGUG-G-GA-GUUGUUGUA--GCUAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 14835 0.67 0.889472
Target:  5'- cGGuCACCUccgCAGCAGCAgCGAgaagagCAGCg -3'
miRNA:   3'- -CC-GUGGGa--GUUGUUGUaGCUa-----GUCGg -5'
19623 3' -50.7 NC_004686.1 + 14473 1.14 0.001472
Target:  5'- gGGCACCCUCAACAACAUCGAUCAGCCc -3'
miRNA:   3'- -CCGUGGGAGUUGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 14405 0.66 0.93483
Target:  5'- aGCACCCcgagcCAACAACccagCGAUC-GUCa -3'
miRNA:   3'- cCGUGGGa----GUUGUUGua--GCUAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 14216 0.8 0.24523
Target:  5'- cGGCACCUUCAGCccaGUCGAUCcacaaggugcGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUGuugUAGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 13473 0.68 0.865826
Target:  5'- cGGCACCaacauUCAACAAC-UCac-CGGCCu -3'
miRNA:   3'- -CCGUGGg----AGUUGUUGuAGcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 12140 0.68 0.873974
Target:  5'- gGGCAgUUUCGGCGcCggCGGUCAGgCCg -3'
miRNA:   3'- -CCGUgGGAGUUGUuGuaGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 11742 0.73 0.580409
Target:  5'- gGGCACCCUgccCAACGGCAUcaacguggagaacgCGggCAGCg -3'
miRNA:   3'- -CCGUGGGA---GUUGUUGUA--------------GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 10213 0.68 0.848769
Target:  5'- cGGUACCCUCAccaccgcccuggACAACcugaauaacUgGGUCAGCg -3'
miRNA:   3'- -CCGUGGGAGU------------UGUUGu--------AgCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 8622 0.68 0.865826
Target:  5'- aGCgACCCgacCGACAGCG-CGGgcCAGCCg -3'
miRNA:   3'- cCG-UGGGa--GUUGUUGUaGCUa-GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8526 0.7 0.750782
Target:  5'- cGCACCgUCAACG-CAUUcaccuUCGGCCg -3'
miRNA:   3'- cCGUGGgAGUUGUuGUAGcu---AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8318 0.67 0.909307
Target:  5'- gGGCagGCCCUCAGgcccagccaaaaAACAUCGAacaagaaggUCcAGCCa -3'
miRNA:   3'- -CCG--UGGGAGUUg-----------UUGUAGCU---------AG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 8212 0.66 0.923316
Target:  5'- cGGagaACCCggccggcgUCAACGaguACAUCGAcgAGCCg -3'
miRNA:   3'- -CCg--UGGG--------AGUUGU---UGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 7213 0.75 0.475193
Target:  5'- cGCGCgCUCuACAACGUCGcccucgcguUCAGCCa -3'
miRNA:   3'- cCGUGgGAGuUGUUGUAGCu--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 6472 0.67 0.913267
Target:  5'- uGGCcgGCUCUCAGCGgugaguccuccgaggGCuuuGUCGAuuuccUCGGCCa -3'
miRNA:   3'- -CCG--UGGGAGUUGU---------------UG---UAGCU-----AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5830 0.81 0.232473
Target:  5'- cGUACCCUCGuuACu-CAUCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGU--UGuuGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5672 0.68 0.873974
Target:  5'- aGGCGUCUaUGAgGACAUCGAacgcagcaUCAGCCa -3'
miRNA:   3'- -CCGUGGGaGUUgUUGUAGCU--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5291 0.67 0.889472
Target:  5'- cGGCgaagAUCCUCGACAccaccaACAUCG-UCgAGCUg -3'
miRNA:   3'- -CCG----UGGGAGUUGU------UGUAGCuAG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 4490 0.76 0.434583
Target:  5'- aGGCugCCaagcUCGACGAgAUCGAgcaGGCCa -3'
miRNA:   3'- -CCGugGG----AGUUGUUgUAGCUag-UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.