miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 22393 0.68 0.865826
Target:  5'- cGGCACCgauggCUaCAACcGCAUCGAcUGGCUg -3'
miRNA:   3'- -CCGUGG-----GA-GUUGuUGUAGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55607 0.69 0.830755
Target:  5'- cGGCACCCUCGGguGCGagGG-CAaCCa -3'
miRNA:   3'- -CCGUGGGAGUUguUGUagCUaGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 24604 0.68 0.838976
Target:  5'- aGGCACCUgaUCGACAcgucccGCGUcaCGGUCAggaggcuGCCg -3'
miRNA:   3'- -CCGUGGG--AGUUGU------UGUA--GCUAGU-------CGG- -5'
19623 3' -50.7 NC_004686.1 + 21188 0.68 0.838976
Target:  5'- uGGCACUggUUCAGC-GCAgacguuuguggugUCGGUCAGCa -3'
miRNA:   3'- -CCGUGG--GAGUUGuUGU-------------AGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 23925 0.68 0.848769
Target:  5'- gGGagccaACCCUUGACGcggccgacaagGCAUCGGgcucggggagUCGGCCg -3'
miRNA:   3'- -CCg----UGGGAGUUGU-----------UGUAGCU----------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 10213 0.68 0.848769
Target:  5'- cGGUACCCUCAccaccgcccuggACAACcugaauaacUgGGUCAGCg -3'
miRNA:   3'- -CCGUGGGAGU------------UGUUGu--------AgCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 21826 0.68 0.848769
Target:  5'- gGGUGCgCCUCGGCGGCGcgggcgCGggCGGCg -3'
miRNA:   3'- -CCGUG-GGAGUUGUUGUa-----GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 55221 0.68 0.848769
Target:  5'- cGGCGCCgUCAACAuCGUCuc-CcGCCa -3'
miRNA:   3'- -CCGUGGgAGUUGUuGUAGcuaGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 22027 0.68 0.865826
Target:  5'- cGGCGCCgaCGGCGgcGCGUCGAcauUCA-CCu -3'
miRNA:   3'- -CCGUGGgaGUUGU--UGUAGCU---AGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 55512 0.69 0.830755
Target:  5'- aGGUACgCgau-CGGCAUCG-UCGGCCa -3'
miRNA:   3'- -CCGUGgGaguuGUUGUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 26892 0.69 0.811862
Target:  5'- -aUACCCUCGACGACAgUGAccuguucaccUCGGCg -3'
miRNA:   3'- ccGUGGGAGUUGUUGUaGCU----------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 25523 0.7 0.744378
Target:  5'- gGGCAgCCCagaUCAACAacccccgcaggGCAUCugcuugguacagccaGAUCGGCCa -3'
miRNA:   3'- -CCGU-GGG---AGUUGU-----------UGUAG---------------CUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29305 0.75 0.485641
Target:  5'- aGGCAuuCCCUCAuGCAgaACAUCaccAUCGGCCg -3'
miRNA:   3'- -CCGU--GGGAGU-UGU--UGUAGc--UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 11742 0.73 0.580409
Target:  5'- gGGCACCCUgccCAACGGCAUcaacguggagaacgCGggCAGCg -3'
miRNA:   3'- -CCGUGGGA---GUUGUUGUA--------------GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 48203 0.73 0.583768
Target:  5'- aGGCacACCCUgCAGCAACA-CGAUUcguccggggaAGCCg -3'
miRNA:   3'- -CCG--UGGGA-GUUGUUGUaGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 16843 0.71 0.673929
Target:  5'- uGGCGCCgCUaCAACAccaccaguguuGCGUUGG-CGGCCg -3'
miRNA:   3'- -CCGUGG-GA-GUUGU-----------UGUAGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 23294 0.71 0.681774
Target:  5'- cGGCACCCaacUCAcccagaacaccgugACGACGUCGGgaacagugUCGGCa -3'
miRNA:   3'- -CCGUGGG---AGU--------------UGUUGUAGCU--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 26709 0.71 0.685129
Target:  5'- cGCACCCUCGuugauGCugucGCcgUGAUCGGCg -3'
miRNA:   3'- cCGUGGGAGU-----UGu---UGuaGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 15777 0.71 0.685129
Target:  5'- cGGCACaCgCUaCGACGACAUggUGAUCcGCCg -3'
miRNA:   3'- -CCGUG-G-GA-GUUGUUGUA--GCUAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 32516 0.71 0.695164
Target:  5'- gGGCGgauccguUCCUUAugGACGUgGggCAGCCa -3'
miRNA:   3'- -CCGU-------GGGAGUugUUGUAgCuaGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.