miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 14473 1.14 0.001472
Target:  5'- gGGCACCCUCAACAACAUCGAUCAGCCc -3'
miRNA:   3'- -CCGUGGGAGUUGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 45682 0.69 0.802111
Target:  5'- cGCugCCUCAGCAAgGUUG-UCGGaCa -3'
miRNA:   3'- cCGugGGAGUUGUUgUAGCuAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 23494 0.69 0.811862
Target:  5'- cGGCAUCUgggUCGGCAGCAUCGaAUUGGg- -3'
miRNA:   3'- -CCGUGGG---AGUUGUUGUAGC-UAGUCgg -5'
19623 3' -50.7 NC_004686.1 + 41572 0.66 0.94015
Target:  5'- cGGCGaaCUCGGCGACGgugCGGgcCAGUCc -3'
miRNA:   3'- -CCGUggGAGUUGUUGUa--GCUa-GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 928 0.75 0.454643
Target:  5'- aGGCGCCUUCGAaacccuCGUCGuAUUGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUguu---GUAGC-UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 7213 0.75 0.475193
Target:  5'- cGCGCgCUCuACAACGUCGcccucgcguUCAGCCa -3'
miRNA:   3'- cCGUGgGAGuUGUUGUAGCu--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 36660 0.73 0.583769
Target:  5'- cGGCGgCgUCGGCGGCGUCGuAUCAaCCg -3'
miRNA:   3'- -CCGUgGgAGUUGUUGUAGC-UAGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 50849 0.72 0.628828
Target:  5'- aGCAgCCUCAACAGCca-GGUCGGgCg -3'
miRNA:   3'- cCGUgGGAGUUGUUGuagCUAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 52664 0.71 0.729274
Target:  5'- cGCgGCCCUgAACGcgGCGUUuGUCGGCCa -3'
miRNA:   3'- cCG-UGGGAgUUGU--UGUAGcUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 20087 0.69 0.792173
Target:  5'- uGGC-CCgCUCAACAACAUCacUCAuGCg -3'
miRNA:   3'- -CCGuGG-GAGUUGUUGUAGcuAGU-CGg -5'
19623 3' -50.7 NC_004686.1 + 32202 0.7 0.761351
Target:  5'- uGGCcuuGCCCUCAACAcagugaagGCAUa---CAGCCa -3'
miRNA:   3'- -CCG---UGGGAGUUGU--------UGUAgcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 48423 0.71 0.68513
Target:  5'- aGCGCCgcaucgagUUCAGCuaucGCGUCGGUCGGCa -3'
miRNA:   3'- cCGUGG--------GAGUUGu---UGUAGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 5830 0.81 0.232473
Target:  5'- cGUACCCUCGuuACu-CAUCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGU--UGuuGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55603 0.7 0.771781
Target:  5'- aGCGCCUUCAACcGCAaaaUC--UCGGCCu -3'
miRNA:   3'- cCGUGGGAGUUGuUGU---AGcuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 14216 0.8 0.24523
Target:  5'- cGGCACCUUCAGCccaGUCGAUCcacaaggugcGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUGuugUAGCUAG----------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 23726 0.72 0.662688
Target:  5'- gGGCACaCCgUgAACAACAUCG-UC-GCCg -3'
miRNA:   3'- -CCGUG-GG-AgUUGUUGUAGCuAGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 31023 0.7 0.786125
Target:  5'- cGGCAgCCUCGACGGCgguuuugaugaugggGUCGA--AGUCg -3'
miRNA:   3'- -CCGUgGGAGUUGUUG---------------UAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 3559 0.69 0.811862
Target:  5'- cGCAgCCUCAACAAUGcUCGGguuUCcGCCu -3'
miRNA:   3'- cCGUgGGAGUUGUUGU-AGCU---AGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 52943 0.8 0.272484
Target:  5'- cGCGCCUUCAGCcuCAgCGAUCAGCUc -3'
miRNA:   3'- cCGUGGGAGUUGuuGUaGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 36327 0.74 0.51761
Target:  5'- cGGCcauGCCCUgAGCGACGaucuggUCGAUCugcGCCg -3'
miRNA:   3'- -CCG---UGGGAgUUGUUGU------AGCUAGu--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.