miRNA display CGI


Results 21 - 40 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 8622 0.68 0.865826
Target:  5'- aGCgACCCgacCGACAGCG-CGGgcCAGCCg -3'
miRNA:   3'- cCG-UGGGa--GUUGUUGUaGCUa-GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 48549 0.68 0.839878
Target:  5'- cGCGCCCcuuUCAG--GCGUUGAUUGGCUg -3'
miRNA:   3'- cCGUGGG---AGUUguUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 32202 0.7 0.761351
Target:  5'- uGGCcuuGCCCUCAACAcagugaagGCAUa---CAGCCa -3'
miRNA:   3'- -CCG---UGGGAGUUGU--------UGUAgcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 36327 0.74 0.51761
Target:  5'- cGGCcauGCCCUgAGCGACGaucuggUCGAUCugcGCCg -3'
miRNA:   3'- -CCG---UGGGAgUUGUUGU------AGCUAGu--CGG- -5'
19623 3' -50.7 NC_004686.1 + 6472 0.67 0.913267
Target:  5'- uGGCcgGCUCUCAGCGgugaguccuccgaggGCuuuGUCGAuuuccUCGGCCa -3'
miRNA:   3'- -CCG--UGGGAGUUGU---------------UG---UAGCU-----AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 14835 0.67 0.889472
Target:  5'- cGGuCACCUccgCAGCAGCAgCGAgaagagCAGCg -3'
miRNA:   3'- -CC-GUGGGa--GUUGUUGUaGCUa-----GUCGg -5'
19623 3' -50.7 NC_004686.1 + 23494 0.69 0.811862
Target:  5'- cGGCAUCUgggUCGGCAGCAUCGaAUUGGg- -3'
miRNA:   3'- -CCGUGGG---AGUUGUUGUAGC-UAGUCgg -5'
19623 3' -50.7 NC_004686.1 + 7213 0.75 0.475193
Target:  5'- cGCGCgCUCuACAACGUCGcccucgcguUCAGCCa -3'
miRNA:   3'- cCGUGgGAGuUGUUGUAGCu--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 35311 0.68 0.873974
Target:  5'- uGUAuuCCUUCGuCGGCAUCGAauccggaagaaUCAGCCu -3'
miRNA:   3'- cCGU--GGGAGUuGUUGUAGCU-----------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 928 0.75 0.454643
Target:  5'- aGGCGCCUUCGAaacccuCGUCGuAUUGGCCg -3'
miRNA:   3'- -CCGUGGGAGUUguu---GUAGC-UAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 24990 0.68 0.839878
Target:  5'- cGCGCCC---GCAGCGaCGA-CGGCCg -3'
miRNA:   3'- cCGUGGGaguUGUUGUaGCUaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 13473 0.68 0.865826
Target:  5'- cGGCACCaacauUCAACAAC-UCac-CGGCCu -3'
miRNA:   3'- -CCGUGGg----AGUUGUUGuAGcuaGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 45682 0.69 0.802111
Target:  5'- cGCugCCUCAGCAAgGUUG-UCGGaCa -3'
miRNA:   3'- cCGugGGAGUUGUUgUAGCuAGUCgG- -5'
19623 3' -50.7 NC_004686.1 + 55603 0.7 0.771781
Target:  5'- aGCGCCUUCAACcGCAaaaUC--UCGGCCu -3'
miRNA:   3'- cCGUGGGAGUUGuUGU---AGcuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 48423 0.71 0.68513
Target:  5'- aGCGCCgcaucgagUUCAGCuaucGCGUCGGUCGGCa -3'
miRNA:   3'- cCGUGG--------GAGUUGu---UGUAGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 36660 0.73 0.583769
Target:  5'- cGGCGgCgUCGGCGGCGUCGuAUCAaCCg -3'
miRNA:   3'- -CCGUgGgAGUUGUUGUAGC-UAGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 46730 0.66 0.917122
Target:  5'- gGGCACguucauacgCCUgAGCGGCGUCugcacCAGCCu -3'
miRNA:   3'- -CCGUG---------GGAgUUGUUGUAGcua--GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 29133 0.66 0.917122
Target:  5'- --gGCCCUCAACggUGaagaUGAUCGGCUu -3'
miRNA:   3'- ccgUGGGAGUUGuuGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 30951 0.67 0.903866
Target:  5'- cGGCcaguGCUUUCGcaGCAGCGgcggCGAUCAGUg -3'
miRNA:   3'- -CCG----UGGGAGU--UGUUGUa---GCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 44104 0.67 0.89681
Target:  5'- cGGUAgCCgCAGCAGaagccgccugGUCGAUCAGaCCg -3'
miRNA:   3'- -CCGUgGGaGUUGUUg---------UAGCUAGUC-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.