miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 16947 0.68 0.865826
Target:  5'- uGGCGgUC-CAACc-CAUgCGGUCAGCCa -3'
miRNA:   3'- -CCGUgGGaGUUGuuGUA-GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5672 0.68 0.873974
Target:  5'- aGGCGUCUaUGAgGACAUCGAacgcagcaUCAGCCa -3'
miRNA:   3'- -CCGUGGGaGUUgUUGUAGCU--------AGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 45609 0.66 0.929218
Target:  5'- cGGCgACCUgcgCGGCGGCuuUCGucuucgCAGCCc -3'
miRNA:   3'- -CCG-UGGGa--GUUGUUGu-AGCua----GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 46730 0.66 0.917122
Target:  5'- gGGCACguucauacgCCUgAGCGGCGUCugcacCAGCCu -3'
miRNA:   3'- -CCGUG---------GGAgUUGUUGUAGcua--GUCGG- -5'
19623 3' -50.7 NC_004686.1 + 46620 0.66 0.94015
Target:  5'- aGCACCUgcagCAGCAACAccaauaccggccUUGAUgcccaGGCCg -3'
miRNA:   3'- cCGUGGGa---GUUGUUGU------------AGCUAg----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 23294 0.71 0.681774
Target:  5'- cGGCACCCaacUCAcccagaacaccgugACGACGUCGGgaacagugUCGGCa -3'
miRNA:   3'- -CCGUGGG---AGU--------------UGUUGUAGCU--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 26709 0.71 0.685129
Target:  5'- cGCACCCUCGuugauGCugucGCcgUGAUCGGCg -3'
miRNA:   3'- cCGUGGGAGU-----UGu---UGuaGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 11742 0.73 0.580409
Target:  5'- gGGCACCCUgccCAACGGCAUcaacguggagaacgCGggCAGCg -3'
miRNA:   3'- -CCGUGGGA---GUUGUUGUA--------------GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 38560 0.67 0.910638
Target:  5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3'
miRNA:   3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 55512 0.69 0.830755
Target:  5'- aGGUACgCgau-CGGCAUCG-UCGGCCa -3'
miRNA:   3'- -CCGUGgGaguuGUUGUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 30852 0.67 0.908637
Target:  5'- cGGCAucaucgccgcuCCCggaucucguucuguUCAuCAGCGcaggCGAUCAGCCa -3'
miRNA:   3'- -CCGU-----------GGG--------------AGUuGUUGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5291 0.67 0.889472
Target:  5'- cGGCgaagAUCCUCGACAccaccaACAUCG-UCgAGCUg -3'
miRNA:   3'- -CCG----UGGGAGUUGU------UGUAGCuAG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 50386 0.67 0.889472
Target:  5'- gGGUAcgacCCCUgAgcguGCAGCGUUGAUCgagagAGCCg -3'
miRNA:   3'- -CCGU----GGGAgU----UGUUGUAGCUAG-----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 35070 0.67 0.881858
Target:  5'- uGGCGUCUggUCGcUGAUGUUGAUCAGCCg -3'
miRNA:   3'- -CCGUGGG--AGUuGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 56032 0.67 0.881858
Target:  5'- cGGCACCCgccaaccCGGCcGCGUCGccuggcgguUCGGCa -3'
miRNA:   3'- -CCGUGGGa------GUUGuUGUAGCu--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 3504 0.67 0.881858
Target:  5'- -aCACCC-CAGCAggcGCGUCGggCcauGGCCg -3'
miRNA:   3'- ccGUGGGaGUUGU---UGUAGCuaG---UCGG- -5'
19623 3' -50.7 NC_004686.1 + 55748 0.67 0.881858
Target:  5'- cGCACCC---ACAccCAUCG-UCAGCCu -3'
miRNA:   3'- cCGUGGGaguUGUu-GUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 21188 0.68 0.838976
Target:  5'- uGGCACUggUUCAGC-GCAgacguuuguggugUCGGUCAGCa -3'
miRNA:   3'- -CCGUGG--GAGUUGuUGU-------------AGCUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 24604 0.68 0.838976
Target:  5'- aGGCACCUgaUCGACAcgucccGCGUcaCGGUCAggaggcuGCCg -3'
miRNA:   3'- -CCGUGGG--AGUUGU------UGUA--GCUAGU-------CGG- -5'
19623 3' -50.7 NC_004686.1 + 55607 0.69 0.830755
Target:  5'- cGGCACCCUCGGguGCGagGG-CAaCCa -3'
miRNA:   3'- -CCGUGGGAGUUguUGUagCUaGUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.