miRNA display CGI


Results 61 - 80 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 3' -50.7 NC_004686.1 + 21826 0.68 0.848769
Target:  5'- gGGUGCgCCUCGGCGGCGcgggcgCGggCGGCg -3'
miRNA:   3'- -CCGUG-GGAGUUGUUGUa-----GCuaGUCGg -5'
19623 3' -50.7 NC_004686.1 + 55221 0.68 0.848769
Target:  5'- cGGCGCCgUCAACAuCGUCuc-CcGCCa -3'
miRNA:   3'- -CCGUGGgAGUUGUuGUAGcuaGuCGG- -5'
19623 3' -50.7 NC_004686.1 + 22027 0.68 0.865826
Target:  5'- cGGCGCCgaCGGCGgcGCGUCGAcauUCA-CCu -3'
miRNA:   3'- -CCGUGGgaGUUGU--UGUAGCU---AGUcGG- -5'
19623 3' -50.7 NC_004686.1 + 22133 0.66 0.94015
Target:  5'- cGCGgCCUCGGCGGCAcCGcuGUCaucaccGGCCu -3'
miRNA:   3'- cCGUgGGAGUUGUUGUaGC--UAG------UCGG- -5'
19623 3' -50.7 NC_004686.1 + 22749 0.66 0.929218
Target:  5'- cGGCGCCg-CGGCuaucGCGgucaccggUGGUCAGCCc -3'
miRNA:   3'- -CCGUGGgaGUUGu---UGUa-------GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 34008 0.66 0.929218
Target:  5'- uGGCGgCCUUGAUGcCGUCaAUCAGCa -3'
miRNA:   3'- -CCGUgGGAGUUGUuGUAGcUAGUCGg -5'
19623 3' -50.7 NC_004686.1 + 45433 0.66 0.929218
Target:  5'- uGGCauACCC-CAACAACcaaCGAcuUCaAGCCa -3'
miRNA:   3'- -CCG--UGGGaGUUGUUGua-GCU--AG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 52981 0.66 0.925712
Target:  5'- gGGCAgcaucucccagcugaUCCUgGACcGCAUCGA--AGCCa -3'
miRNA:   3'- -CCGU---------------GGGAgUUGuUGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8212 0.66 0.923316
Target:  5'- cGGagaACCCggccggcgUCAACGaguACAUCGAcgAGCCg -3'
miRNA:   3'- -CCg--UGGG--------AGUUGU---UGUAGCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 8318 0.67 0.909307
Target:  5'- gGGCagGCCCUCAGgcccagccaaaaAACAUCGAacaagaaggUCcAGCCa -3'
miRNA:   3'- -CCG--UGGGAGUUg-----------UUGUAGCU---------AG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 38560 0.67 0.910638
Target:  5'- uGCGCCCUCcuCGACGcuggagucccCGAagGGCCg -3'
miRNA:   3'- cCGUGGGAGuuGUUGUa---------GCUagUCGG- -5'
19623 3' -50.7 NC_004686.1 + 30852 0.67 0.908637
Target:  5'- cGGCAucaucgccgcuCCCggaucucguucuguUCAuCAGCGcaggCGAUCAGCCa -3'
miRNA:   3'- -CCGU-----------GGG--------------AGUuGUUGUa---GCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 5291 0.67 0.889472
Target:  5'- cGGCgaagAUCCUCGACAccaccaACAUCG-UCgAGCUg -3'
miRNA:   3'- -CCG----UGGGAGUUGU------UGUAGCuAG-UCGG- -5'
19623 3' -50.7 NC_004686.1 + 50386 0.67 0.889472
Target:  5'- gGGUAcgacCCCUgAgcguGCAGCGUUGAUCgagagAGCCg -3'
miRNA:   3'- -CCGU----GGGAgU----UGUUGUAGCUAG-----UCGG- -5'
19623 3' -50.7 NC_004686.1 + 35070 0.67 0.881858
Target:  5'- uGGCGUCUggUCGcUGAUGUUGAUCAGCCg -3'
miRNA:   3'- -CCGUGGG--AGUuGUUGUAGCUAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 56032 0.67 0.881858
Target:  5'- cGGCACCCgccaaccCGGCcGCGUCGccuggcgguUCGGCa -3'
miRNA:   3'- -CCGUGGGa------GUUGuUGUAGCu--------AGUCGg -5'
19623 3' -50.7 NC_004686.1 + 55748 0.67 0.881858
Target:  5'- cGCACCC---ACAccCAUCG-UCAGCCu -3'
miRNA:   3'- cCGUGGGaguUGUu-GUAGCuAGUCGG- -5'
19623 3' -50.7 NC_004686.1 + 3504 0.67 0.881858
Target:  5'- -aCACCC-CAGCAggcGCGUCGggCcauGGCCg -3'
miRNA:   3'- ccGUGGGaGUUGU---UGUAGCuaG---UCGG- -5'
19623 3' -50.7 NC_004686.1 + 12140 0.68 0.873974
Target:  5'- gGGCAgUUUCGGCGcCggCGGUCAGgCCg -3'
miRNA:   3'- -CCGUgGGAGUUGUuGuaGCUAGUC-GG- -5'
19623 3' -50.7 NC_004686.1 + 22393 0.68 0.865826
Target:  5'- cGGCACCgauggCUaCAACcGCAUCGAcUGGCUg -3'
miRNA:   3'- -CCGUGG-----GA-GUUGuUGUAGCUaGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.