miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 6564 0.66 0.94422
Target:  5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3'
miRNA:   3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 2910 0.66 0.942736
Target:  5'- -uGACCCCGUacaCGGCGguaguuguuaccggUCAGCGggUGa -3'
miRNA:   3'- ugUUGGGGUA---GCUGC--------------AGUUGCuuGCg -5'
19623 5' -50.9 NC_004686.1 + 13514 0.66 0.939176
Target:  5'- cACAACCCCGUCaacacaucacgaGAC-UCAGCagcCGCa -3'
miRNA:   3'- -UGUUGGGGUAG------------CUGcAGUUGcuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 37725 0.66 0.939176
Target:  5'- --uACCggaCCGg-GGCGUCGugGAGCGCc -3'
miRNA:   3'- uguUGG---GGUagCUGCAGUugCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 8944 0.66 0.934395
Target:  5'- uCGGCCCCcgaaucuccuggggUGACGUCcGCGAccugACGCc -3'
miRNA:   3'- uGUUGGGGua------------GCUGCAGuUGCU----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 36945 0.66 0.93385
Target:  5'- cGCAACucgugcacaCCgGUCGACGUUu-CGAACGa -3'
miRNA:   3'- -UGUUG---------GGgUAGCUGCAGuuGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 33620 0.66 0.93385
Target:  5'- -gGACCCCAggGGCGcgAACGuccGACGCu -3'
miRNA:   3'- ugUUGGGGUagCUGCagUUGC---UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 15138 0.66 0.933301
Target:  5'- gACGguGCCCCGuaccugaUCGGCGaCAACGggUuaggGCa -3'
miRNA:   3'- -UGU--UGGGGU-------AGCUGCaGUUGCuuG----CG- -5'
19623 5' -50.9 NC_004686.1 + 43989 0.66 0.930516
Target:  5'- uACGACacaCCAcgcuuagCGGCGUUAgcacccaacccgauuGCGAACGCc -3'
miRNA:   3'- -UGUUGg--GGUa------GCUGCAGU---------------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 21727 0.66 0.928237
Target:  5'- -gAACCCCGUCGGuCG-CcgUGAAgGCu -3'
miRNA:   3'- ugUUGGGGUAGCU-GCaGuuGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 37380 0.66 0.922338
Target:  5'- cGCAccGCCgCCGUCGACuUC-ACGuuCGCa -3'
miRNA:   3'- -UGU--UGG-GGUAGCUGcAGuUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 39738 0.66 0.922338
Target:  5'- gGCGGCCCgCcugcUCGACGaCGgcgccuccuacACGGACGCc -3'
miRNA:   3'- -UGUUGGG-Gu---AGCUGCaGU-----------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 22373 0.66 0.916153
Target:  5'- gACGGCUCCAaUGGCGgcaccggCAcCGAugGCu -3'
miRNA:   3'- -UGUUGGGGUaGCUGCa------GUuGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 43744 0.66 0.916153
Target:  5'- gGCGguGCCCCAUugcccugaugUGGCaUCGGCGGAgGCu -3'
miRNA:   3'- -UGU--UGGGGUA----------GCUGcAGUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 41825 0.66 0.916153
Target:  5'- -gGAgUUCAUCG-CGUCGAUGAACGa -3'
miRNA:   3'- ugUUgGGGUAGCuGCAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 53209 0.66 0.916153
Target:  5'- cCGACUUUAUCGuucCGUCAGCGuuuuucAGCGCc -3'
miRNA:   3'- uGUUGGGGUAGCu--GCAGUUGC------UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 23750 0.67 0.90293
Target:  5'- gGCAguGCUCUA-CGAgGUCAGCGGcaACGUg -3'
miRNA:   3'- -UGU--UGGGGUaGCUgCAGUUGCU--UGCG- -5'
19623 5' -50.9 NC_004686.1 + 40311 0.67 0.90293
Target:  5'- gGC-ACUUCAUCGGCGUCAGUGAccACuGCu -3'
miRNA:   3'- -UGuUGGGGUAGCUGCAGUUGCU--UG-CG- -5'
19623 5' -50.9 NC_004686.1 + 53071 0.67 0.895899
Target:  5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3'
miRNA:   3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.