Results 41 - 60 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 31289 | 0.69 | 0.809563 |
Target: 5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3' miRNA: 3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 8216 | 0.69 | 0.80181 |
Target: 5'- -gAACCCgGcCGGCGUCAACGAguACa- -3' miRNA: 3'- ugUUGGGgUaGCUGCAGUUGCU--UGcg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 16603 | 0.69 | 0.830232 |
Target: 5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3' miRNA: 3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 10757 | 0.69 | 0.800833 |
Target: 5'- gGC-ACCCCcgCGGCG-CAAgccgcccUGGACGCg -3' miRNA: 3'- -UGuUGGGGuaGCUGCaGUU-------GCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 27724 | 0.69 | 0.791954 |
Target: 5'- gGCAACCCaGUCGGCGaagggcUCGGCaucguGAugGCg -3' miRNA: 3'- -UGUUGGGgUAGCUGC------AGUUG-----CUugCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 55253 | 0.69 | 0.791954 |
Target: 5'- uCAACCUCAUCGGCcaauaCGACGAGgGUu -3' miRNA: 3'- uGUUGGGGUAGCUGca---GUUGCUUgCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 137 | 0.69 | 0.811483 |
Target: 5'- gACGAUCCCGgaUCGuCGUggaAGCGAACGg -3' miRNA: 3'- -UGUUGGGGU--AGCuGCAg--UUGCUUGCg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 41605 | 0.7 | 0.771735 |
Target: 5'- aACuACCCCAccgaaaUCGAaGUUGAgGAACGCg -3' miRNA: 3'- -UGuUGGGGU------AGCUgCAGUUgCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 24865 | 0.7 | 0.740319 |
Target: 5'- cACAggacACCCCGccaUCGACuucuUCAuCGAACGCg -3' miRNA: 3'- -UGU----UGGGGU---AGCUGc---AGUuGCUUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 51721 | 0.7 | 0.781925 |
Target: 5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3' miRNA: 3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 53956 | 0.7 | 0.771735 |
Target: 5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3' miRNA: 3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 6671 | 0.7 | 0.740319 |
Target: 5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3' miRNA: 3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 25933 | 0.7 | 0.761396 |
Target: 5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3' miRNA: 3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 50928 | 0.7 | 0.780913 |
Target: 5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3' miRNA: 3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 4271 | 0.71 | 0.696904 |
Target: 5'- --cGCCCaCGUcCGGCgGUCAACGGACGg -3' miRNA: 3'- uguUGGG-GUA-GCUG-CAGUUGCUUGCg -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 19629 | 0.72 | 0.674758 |
Target: 5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3' miRNA: 3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 476 | 0.72 | 0.630056 |
Target: 5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3' miRNA: 3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 52057 | 0.72 | 0.663618 |
Target: 5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3' miRNA: 3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 10220 | 0.73 | 0.607673 |
Target: 5'- aGCcGCCCCAaggCGGCGUCAAgguucUGAACcGCg -3' miRNA: 3'- -UGuUGGGGUa--GCUGCAGUU-----GCUUG-CG- -5' |
|||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 9958 | 0.73 | 0.596509 |
Target: 5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3' miRNA: 3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home