Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 41770 | 1.13 | 0.00182 |
Target: 5'- cACAACCCCAUCGACGUCAACGAACGCg -3' miRNA: 3'- -UGUUGGGGUAGCUGCAGUUGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 54920 | 0.77 | 0.362747 |
Target: 5'- aACAAguUCUCGUCGugGaCGACGGACGCa -3' miRNA: 3'- -UGUU--GGGGUAGCugCaGUUGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 29112 | 0.77 | 0.380522 |
Target: 5'- aGCAGCgUCGggaUCGGCGUCGGCGGGcCGCg -3' miRNA: 3'- -UGUUGgGGU---AGCUGCAGUUGCUU-GCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 32539 | 0.74 | 0.519725 |
Target: 5'- aACAACaUCGUCGcCGUCAuCGGGCGCa -3' miRNA: 3'- -UGUUGgGGUAGCuGCAGUuGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 43742 | 0.74 | 0.530491 |
Target: 5'- cGCAACCugggccgccgcgCCAUCGGCGUCGAacucgaaGAACGg -3' miRNA: 3'- -UGUUGG------------GGUAGCUGCAGUUg------CUUGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 21798 | 0.74 | 0.541338 |
Target: 5'- cCAACCCCuGUCGGCGcgacgCAcuuGCGggUGCg -3' miRNA: 3'- uGUUGGGG-UAGCUGCa----GU---UGCuuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 54153 | 0.74 | 0.541338 |
Target: 5'- gGCAACgCCAacgCGAUGUCGcgGCGAACaGCg -3' miRNA: 3'- -UGUUGgGGUa--GCUGCAGU--UGCUUG-CG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 5883 | 0.73 | 0.585377 |
Target: 5'- gAUcuCCCCuaucaggauucGUCGGCGUCGcggaccacaGCGAACGCa -3' miRNA: 3'- -UGuuGGGG-----------UAGCUGCAGU---------UGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 9958 | 0.73 | 0.596509 |
Target: 5'- uCGACCCCAUaucgucgagCGACGUUugAGCGAuCGCc -3' miRNA: 3'- uGUUGGGGUA---------GCUGCAG--UUGCUuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 41657 | 0.73 | 0.607673 |
Target: 5'- aACAACUCCuggaCGACG-CAGCGAagaaggGCGCg -3' miRNA: 3'- -UGUUGGGGua--GCUGCaGUUGCU------UGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 10220 | 0.73 | 0.607673 |
Target: 5'- aGCcGCCCCAaggCGGCGUCAAgguucUGAACcGCg -3' miRNA: 3'- -UGuUGGGGUa--GCUGCAGUU-----GCUUG-CG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 3896 | 0.73 | 0.618859 |
Target: 5'- -aGGCCCCAagauccUCGAUGgguUCAACGAuCGCg -3' miRNA: 3'- ugUUGGGGU------AGCUGC---AGUUGCUuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 476 | 0.72 | 0.630056 |
Target: 5'- -uGACCgCC--CGGCGUCGGCGuAACGCg -3' miRNA: 3'- ugUUGG-GGuaGCUGCAGUUGC-UUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 52057 | 0.72 | 0.663618 |
Target: 5'- cGCAA-CCCAUCGcCGUgCAACGAuUGCa -3' miRNA: 3'- -UGUUgGGGUAGCuGCA-GUUGCUuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 19629 | 0.72 | 0.674758 |
Target: 5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3' miRNA: 3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 4271 | 0.71 | 0.696904 |
Target: 5'- --cGCCCaCGUcCGGCgGUCAACGGACGg -3' miRNA: 3'- uguUGGG-GUA-GCUG-CAGUUGCUUGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 6671 | 0.7 | 0.740319 |
Target: 5'- uCGugCCCAgCGAgcuucggcucCGUCGACGAugGUg -3' miRNA: 3'- uGUugGGGUaGCU----------GCAGUUGCUugCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 24865 | 0.7 | 0.740319 |
Target: 5'- cACAggacACCCCGccaUCGACuucuUCAuCGAACGCg -3' miRNA: 3'- -UGU----UGGGGU---AGCUGc---AGUuGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 25933 | 0.7 | 0.761396 |
Target: 5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3' miRNA: 3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 41605 | 0.7 | 0.771735 |
Target: 5'- aACuACCCCAccgaaaUCGAaGUUGAgGAACGCg -3' miRNA: 3'- -UGuUGGGGU------AGCUgCAGUUgCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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