miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 53956 0.7 0.771735
Target:  5'- uGCGACCUCAUCGucauCaUCAACGAagACGg -3'
miRNA:   3'- -UGUUGGGGUAGCu---GcAGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 50928 0.7 0.780913
Target:  5'- gACAACaCCCAcacggauUCGACGUCGuCG-GCGUu -3'
miRNA:   3'- -UGUUG-GGGU-------AGCUGCAGUuGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 51721 0.7 0.781925
Target:  5'- cCGACCUCuUCaggGACGUCGGCGAgguggGCGUa -3'
miRNA:   3'- uGUUGGGGuAG---CUGCAGUUGCU-----UGCG- -5'
19623 5' -50.9 NC_004686.1 + 27724 0.69 0.791954
Target:  5'- gGCAACCCaGUCGGCGaagggcUCGGCaucguGAugGCg -3'
miRNA:   3'- -UGUUGGGgUAGCUGC------AGUUG-----CUugCG- -5'
19623 5' -50.9 NC_004686.1 + 55253 0.69 0.791954
Target:  5'- uCAACCUCAUCGGCcaauaCGACGAGgGUu -3'
miRNA:   3'- uGUUGGGGUAGCUGca---GUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 10757 0.69 0.800833
Target:  5'- gGC-ACCCCcgCGGCG-CAAgccgcccUGGACGCg -3'
miRNA:   3'- -UGuUGGGGuaGCUGCaGUU-------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 8216 0.69 0.80181
Target:  5'- -gAACCCgGcCGGCGUCAACGAguACa- -3'
miRNA:   3'- ugUUGGGgUaGCUGCAGUUGCU--UGcg -5'
19623 5' -50.9 NC_004686.1 + 31289 0.69 0.809563
Target:  5'- cACGugCUCGaauUCGGCGUCuuuuucaggguCGAACGCu -3'
miRNA:   3'- -UGUugGGGU---AGCUGCAGuu---------GCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 137 0.69 0.811483
Target:  5'- gACGAUCCCGgaUCGuCGUggaAGCGAACGg -3'
miRNA:   3'- -UGUUGGGGU--AGCuGCAg--UUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 16603 0.69 0.830232
Target:  5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3'
miRNA:   3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 52294 0.69 0.830232
Target:  5'- uCGGCCCCcUCGGCu---GCGAAUGCc -3'
miRNA:   3'- uGUUGGGGuAGCUGcaguUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49068 0.68 0.839288
Target:  5'- -gGACgCCC-UgGugGUCAGCGAgggagaGCGCg -3'
miRNA:   3'- ugUUG-GGGuAgCugCAGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 21246 0.68 0.839288
Target:  5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3'
miRNA:   3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 294 0.68 0.855867
Target:  5'- aGC-GCCUCAUCaguacugacgauGugGUCAaccucgaACGAACGCg -3'
miRNA:   3'- -UGuUGGGGUAG------------CugCAGU-------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 172 0.68 0.856715
Target:  5'- aGCGuCCCCGUC-ACGcCGGCGAACc- -3'
miRNA:   3'- -UGUuGGGGUAGcUGCaGUUGCUUGcg -5'
19623 5' -50.9 NC_004686.1 + 32324 0.68 0.856715
Target:  5'- aGCAGCCCCucagccaCGGCGUCcuUcAACGCc -3'
miRNA:   3'- -UGUUGGGGua-----GCUGCAGuuGcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19222 0.68 0.856715
Target:  5'- cACGuCCUCAUCGGCGUCGA--AAUGUu -3'
miRNA:   3'- -UGUuGGGGUAGCUGCAGUUgcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 8140 0.68 0.865068
Target:  5'- --cACCCCGUCGACcacgCGgaccACGAACGa -3'
miRNA:   3'- uguUGGGGUAGCUGca--GU----UGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 23801 0.68 0.865068
Target:  5'- cGCAACCCCcgcCGAUGUgAGC-GugGCu -3'
miRNA:   3'- -UGUUGGGGua-GCUGCAgUUGcUugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.