miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 22325 0.68 0.868339
Target:  5'- gACGGCCCCGccgguaauggcggguUCGGa-UCGGCGGGCGg -3'
miRNA:   3'- -UGUUGGGGU---------------AGCUgcAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 13922 0.68 0.868339
Target:  5'- cCAGuCCCCAUCccacaaucggaugagGACGUCuuCGucGCGCa -3'
miRNA:   3'- uGUU-GGGGUAG---------------CUGCAGuuGCu-UGCG- -5'
19623 5' -50.9 NC_004686.1 + 8069 0.68 0.87317
Target:  5'- uGCGAUgCCCGUCGgugaaguccACGUCAACGu-UGCu -3'
miRNA:   3'- -UGUUG-GGGUAGC---------UGCAGUUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 55980 0.67 0.881013
Target:  5'- cCAACCCCucacugGUCGACcaCAGCGAcaACGg -3'
miRNA:   3'- uGUUGGGG------UAGCUGcaGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 30430 0.67 0.888591
Target:  5'- -gAACCCgGUCGAUGgUCGccACGAugcgauccaACGCa -3'
miRNA:   3'- ugUUGGGgUAGCUGC-AGU--UGCU---------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 18321 0.67 0.888591
Target:  5'- cACGAUCCUucaGGUGUCGuCGAACGCg -3'
miRNA:   3'- -UGUUGGGGuagCUGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 22478 0.67 0.895898
Target:  5'- uCAGCCCCGcccCGGCGgCGAUGAcCGUc -3'
miRNA:   3'- uGUUGGGGUa--GCUGCaGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 18862 0.67 0.895898
Target:  5'- gACAAucCCCCGUUGGugauugcgaaGUCGGCGGugGUa -3'
miRNA:   3'- -UGUU--GGGGUAGCUg---------CAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 53334 0.67 0.895899
Target:  5'- uGCAACCCCAUC-AUGgguuuagugaUCcgcgacugcccgAACGGACGCu -3'
miRNA:   3'- -UGUUGGGGUAGcUGC----------AG------------UUGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 53071 0.67 0.895899
Target:  5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3'
miRNA:   3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5'
19623 5' -50.9 NC_004686.1 + 40311 0.67 0.90293
Target:  5'- gGC-ACUUCAUCGGCGUCAGUGAccACuGCu -3'
miRNA:   3'- -UGuUGGGGUAGCUGCAGUUGCU--UG-CG- -5'
19623 5' -50.9 NC_004686.1 + 23750 0.67 0.90293
Target:  5'- gGCAguGCUCUA-CGAgGUCAGCGGcaACGUg -3'
miRNA:   3'- -UGU--UGGGGUaGCUgCAGUUGCU--UGCG- -5'
19623 5' -50.9 NC_004686.1 + 53209 0.66 0.916153
Target:  5'- cCGACUUUAUCGuucCGUCAGCGuuuuucAGCGCc -3'
miRNA:   3'- uGUUGGGGUAGCu--GCAGUUGC------UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 43744 0.66 0.916153
Target:  5'- gGCGguGCCCCAUugcccugaugUGGCaUCGGCGGAgGCu -3'
miRNA:   3'- -UGU--UGGGGUA----------GCUGcAGUUGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 41825 0.66 0.916153
Target:  5'- -gGAgUUCAUCG-CGUCGAUGAACGa -3'
miRNA:   3'- ugUUgGGGUAGCuGCAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 22373 0.66 0.916153
Target:  5'- gACGGCUCCAaUGGCGgcaccggCAcCGAugGCu -3'
miRNA:   3'- -UGUUGGGGUaGCUGCa------GUuGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 37380 0.66 0.922338
Target:  5'- cGCAccGCCgCCGUCGACuUC-ACGuuCGCa -3'
miRNA:   3'- -UGU--UGG-GGUAGCUGcAGuUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 39738 0.66 0.922338
Target:  5'- gGCGGCCCgCcugcUCGACGaCGgcgccuccuacACGGACGCc -3'
miRNA:   3'- -UGUUGGG-Gu---AGCUGCaGU-----------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49312 0.66 0.922338
Target:  5'- -gGACCgaCGUgCGACGa-AGCGAACGCg -3'
miRNA:   3'- ugUUGGg-GUA-GCUGCagUUGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.