Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19623 | 5' | -50.9 | NC_004686.1 | + | 21727 | 0.66 | 0.928237 |
Target: 5'- -gAACCCCGUCGGuCG-CcgUGAAgGCu -3' miRNA: 3'- ugUUGGGGUAGCU-GCaGuuGCUUgCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 43989 | 0.66 | 0.930516 |
Target: 5'- uACGACacaCCAcgcuuagCGGCGUUAgcacccaacccgauuGCGAACGCc -3' miRNA: 3'- -UGUUGg--GGUa------GCUGCAGU---------------UGCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 15138 | 0.66 | 0.933301 |
Target: 5'- gACGguGCCCCGuaccugaUCGGCGaCAACGggUuaggGCa -3' miRNA: 3'- -UGU--UGGGGU-------AGCUGCaGUUGCuuG----CG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 36945 | 0.66 | 0.93385 |
Target: 5'- cGCAACucgugcacaCCgGUCGACGUUu-CGAACGa -3' miRNA: 3'- -UGUUG---------GGgUAGCUGCAGuuGCUUGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 33620 | 0.66 | 0.93385 |
Target: 5'- -gGACCCCAggGGCGcgAACGuccGACGCu -3' miRNA: 3'- ugUUGGGGUagCUGCagUUGC---UUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 8944 | 0.66 | 0.934395 |
Target: 5'- uCGGCCCCcgaaucuccuggggUGACGUCcGCGAccugACGCc -3' miRNA: 3'- uGUUGGGGua------------GCUGCAGuUGCU----UGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 13514 | 0.66 | 0.939176 |
Target: 5'- cACAACCCCGUCaacacaucacgaGAC-UCAGCagcCGCa -3' miRNA: 3'- -UGUUGGGGUAG------------CUGcAGUUGcuuGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 37725 | 0.66 | 0.939176 |
Target: 5'- --uACCggaCCGg-GGCGUCGugGAGCGCc -3' miRNA: 3'- uguUGG---GGUagCUGCAGUugCUUGCG- -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 2910 | 0.66 | 0.942736 |
Target: 5'- -uGACCCCGUacaCGGCGguaguuguuaccggUCAGCGggUGa -3' miRNA: 3'- ugUUGGGGUA---GCUGC--------------AGUUGCuuGCg -5' |
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19623 | 5' | -50.9 | NC_004686.1 | + | 6564 | 0.66 | 0.94422 |
Target: 5'- cGCAugCCCAgguUCGAUcaaaCGAgGGGCGCc -3' miRNA: 3'- -UGUugGGGU---AGCUGca--GUUgCUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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