miRNA display CGI


Results 21 - 40 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 53071 0.67 0.895899
Target:  5'- cCAA-CCCAUUGAUGUCAGaccaauGCGCa -3'
miRNA:   3'- uGUUgGGGUAGCUGCAGUUgcu---UGCG- -5'
19623 5' -50.9 NC_004686.1 + 22478 0.67 0.895898
Target:  5'- uCAGCCCCGcccCGGCGgCGAUGAcCGUc -3'
miRNA:   3'- uGUUGGGGUa--GCUGCaGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 18862 0.67 0.895898
Target:  5'- gACAAucCCCCGUUGGugauugcgaaGUCGGCGGugGUa -3'
miRNA:   3'- -UGUU--GGGGUAGCUg---------CAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 18321 0.67 0.888591
Target:  5'- cACGAUCCUucaGGUGUCGuCGAACGCg -3'
miRNA:   3'- -UGUUGGGGuagCUGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 30430 0.67 0.888591
Target:  5'- -gAACCCgGUCGAUGgUCGccACGAugcgauccaACGCa -3'
miRNA:   3'- ugUUGGGgUAGCUGC-AGU--UGCU---------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 55980 0.67 0.881013
Target:  5'- cCAACCCCucacugGUCGACcaCAGCGAcaACGg -3'
miRNA:   3'- uGUUGGGG------UAGCUGcaGUUGCU--UGCg -5'
19623 5' -50.9 NC_004686.1 + 8069 0.68 0.87317
Target:  5'- uGCGAUgCCCGUCGgugaaguccACGUCAACGu-UGCu -3'
miRNA:   3'- -UGUUG-GGGUAGC---------UGCAGUUGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 13922 0.68 0.868339
Target:  5'- cCAGuCCCCAUCccacaaucggaugagGACGUCuuCGucGCGCa -3'
miRNA:   3'- uGUU-GGGGUAG---------------CUGCAGuuGCu-UGCG- -5'
19623 5' -50.9 NC_004686.1 + 22325 0.68 0.868339
Target:  5'- gACGGCCCCGccgguaauggcggguUCGGa-UCGGCGGGCGg -3'
miRNA:   3'- -UGUUGGGGU---------------AGCUgcAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 8140 0.68 0.865068
Target:  5'- --cACCCCGUCGACcacgCGgaccACGAACGa -3'
miRNA:   3'- uguUGGGGUAGCUGca--GU----UGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 23801 0.68 0.865068
Target:  5'- cGCAACCCCcgcCGAUGUgAGC-GugGCu -3'
miRNA:   3'- -UGUUGGGGua-GCUGCAgUUGcUugCG- -5'
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 32324 0.68 0.856715
Target:  5'- aGCAGCCCCucagccaCGGCGUCcuUcAACGCc -3'
miRNA:   3'- -UGUUGGGGua-----GCUGCAGuuGcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19222 0.68 0.856715
Target:  5'- cACGuCCUCAUCGGCGUCGA--AAUGUu -3'
miRNA:   3'- -UGUuGGGGUAGCUGCAGUUgcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 172 0.68 0.856715
Target:  5'- aGCGuCCCCGUC-ACGcCGGCGAACc- -3'
miRNA:   3'- -UGUuGGGGUAGcUGCaGUUGCUUGcg -5'
19623 5' -50.9 NC_004686.1 + 294 0.68 0.855867
Target:  5'- aGC-GCCUCAUCaguacugacgauGugGUCAaccucgaACGAACGCg -3'
miRNA:   3'- -UGuUGGGGUAG------------CugCAGU-------UGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 49068 0.68 0.839288
Target:  5'- -gGACgCCC-UgGugGUCAGCGAgggagaGCGCg -3'
miRNA:   3'- ugUUG-GGGuAgCugCAGUUGCU------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 21246 0.68 0.839288
Target:  5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3'
miRNA:   3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 52294 0.69 0.830232
Target:  5'- uCGGCCCCcUCGGCu---GCGAAUGCc -3'
miRNA:   3'- uGUUGGGGuAGCUGcaguUGCUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.