miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19623 5' -50.9 NC_004686.1 + 16603 0.69 0.830232
Target:  5'- gACAGCCUguUCGAUccguuGUCGugGGugGUc -3'
miRNA:   3'- -UGUUGGGguAGCUG-----CAGUugCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 18321 0.67 0.888591
Target:  5'- cACGAUCCUucaGGUGUCGuCGAACGCg -3'
miRNA:   3'- -UGUUGGGGuagCUGCAGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 18862 0.67 0.895898
Target:  5'- gACAAucCCCCGUUGGugauugcgaaGUCGGCGGugGUa -3'
miRNA:   3'- -UGUU--GGGGUAGCUg---------CAGUUGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 19222 0.68 0.856715
Target:  5'- cACGuCCUCAUCGGCGUCGA--AAUGUu -3'
miRNA:   3'- -UGUuGGGGUAGCUGCAGUUgcUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 19332 0.67 0.888591
Target:  5'- aGCAGCCCuCGcCGAacUCAGCGAGuCGUa -3'
miRNA:   3'- -UGUUGGG-GUaGCUgcAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 19629 0.72 0.674758
Target:  5'- cACAACCguuuCCggCGGCGUCGGCG-GCGUc -3'
miRNA:   3'- -UGUUGG----GGuaGCUGCAGUUGCuUGCG- -5'
19623 5' -50.9 NC_004686.1 + 21246 0.68 0.839288
Target:  5'- cCAGCCCCcgCGGCG-CGGaacAACGCc -3'
miRNA:   3'- uGUUGGGGuaGCUGCaGUUgc-UUGCG- -5'
19623 5' -50.9 NC_004686.1 + 21727 0.66 0.928237
Target:  5'- -gAACCCCGUCGGuCG-CcgUGAAgGCu -3'
miRNA:   3'- ugUUGGGGUAGCU-GCaGuuGCUUgCG- -5'
19623 5' -50.9 NC_004686.1 + 21798 0.74 0.541338
Target:  5'- cCAACCCCuGUCGGCGcgacgCAcuuGCGggUGCg -3'
miRNA:   3'- uGUUGGGG-UAGCUGCa----GU---UGCuuGCG- -5'
19623 5' -50.9 NC_004686.1 + 22325 0.68 0.868339
Target:  5'- gACGGCCCCGccgguaauggcggguUCGGa-UCGGCGGGCGg -3'
miRNA:   3'- -UGUUGGGGU---------------AGCUgcAGUUGCUUGCg -5'
19623 5' -50.9 NC_004686.1 + 22373 0.66 0.916153
Target:  5'- gACGGCUCCAaUGGCGgcaccggCAcCGAugGCu -3'
miRNA:   3'- -UGUUGGGGUaGCUGCa------GUuGCUugCG- -5'
19623 5' -50.9 NC_004686.1 + 22478 0.67 0.895898
Target:  5'- uCAGCCCCGcccCGGCGgCGAUGAcCGUc -3'
miRNA:   3'- uGUUGGGGUa--GCUGCaGUUGCUuGCG- -5'
19623 5' -50.9 NC_004686.1 + 23750 0.67 0.90293
Target:  5'- gGCAguGCUCUA-CGAgGUCAGCGGcaACGUg -3'
miRNA:   3'- -UGU--UGGGGUaGCUgCAGUUGCU--UGCG- -5'
19623 5' -50.9 NC_004686.1 + 23801 0.68 0.865068
Target:  5'- cGCAACCCCcgcCGAUGUgAGC-GugGCu -3'
miRNA:   3'- -UGUUGGGGua-GCUGCAgUUGcUugCG- -5'
19623 5' -50.9 NC_004686.1 + 24865 0.7 0.740319
Target:  5'- cACAggacACCCCGccaUCGACuucuUCAuCGAACGCg -3'
miRNA:   3'- -UGU----UGGGGU---AGCUGc---AGUuGCUUGCG- -5'
19623 5' -50.9 NC_004686.1 + 25933 0.7 0.761396
Target:  5'- gACGAUgUCAcCGACGUCGGCGAAacCGUu -3'
miRNA:   3'- -UGUUGgGGUaGCUGCAGUUGCUU--GCG- -5'
19623 5' -50.9 NC_004686.1 + 27498 0.68 0.860086
Target:  5'- -aGACCCCggCGgaaGUCGGCGAgccgguagugcagcgGCGCg -3'
miRNA:   3'- ugUUGGGGuaGCug-CAGUUGCU---------------UGCG- -5'
19623 5' -50.9 NC_004686.1 + 27724 0.69 0.791954
Target:  5'- gGCAACCCaGUCGGCGaagggcUCGGCaucguGAugGCg -3'
miRNA:   3'- -UGUUGGGgUAGCUGC------AGUUG-----CUugCG- -5'
19623 5' -50.9 NC_004686.1 + 29112 0.77 0.380522
Target:  5'- aGCAGCgUCGggaUCGGCGUCGGCGGGcCGCg -3'
miRNA:   3'- -UGUUGgGGU---AGCUGCAGUUGCUU-GCG- -5'
19623 5' -50.9 NC_004686.1 + 30430 0.67 0.888591
Target:  5'- -gAACCCgGUCGAUGgUCGccACGAugcgauccaACGCa -3'
miRNA:   3'- ugUUGGGgUAGCUGC-AGU--UGCU---------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.